Warning: Permanently added '54.164.163.224' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 1297528 --chroot fedora-rawhide-aarch64 --detached Version: 0.37 Task: {'build_id': 1297528, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': True, 'fetch_sources_only': True, 'git_hash': 'be3e74509035237d6c82ada2fabbd1518aa5f460', 'git_repo': 'junghans/gromacs/gromacs', 'memory_reqs': 2048, 'package_name': 'gromacs', 'package_version': '2020.1-1.fc31', 'project_dirname': 'gromacs', 'project_name': 'gromacs', 'project_owner': 'junghans', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/junghans/gromacs/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'junghans/gromacs--junghans', 'source_json': {'clone_url': 'https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git', 'committish': 'be3e74509035237d6c82ada2fabbd1518aa5f460'}, 'source_type': 8, 'submitter': 'junghans', 'task_id': '1297528-fedora-rawhide-aarch64', 'timeout': 86400, 'use_bootstrap_container': False, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git /tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/gromacs --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git', '/tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/gromacs', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/gromacs'... Running: git checkout be3e74509035237d6c82ada2fabbd1518aa5f460 cmd: ['git', 'checkout', 'be3e74509035237d6c82ada2fabbd1518aa5f460'] cwd: /tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/gromacs rc: 0 stdout: stderr: Note: switching to 'be3e74509035237d6c82ada2fabbd1518aa5f460'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at be3e745 automatic import of gromacs Running: cp -r . /tmp/copr-rpmbuild-j6gjl8sg cmd: ['cp', '-r', '.', '/tmp/copr-rpmbuild-j6gjl8sg'] cwd: /tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/gromacs rc: 0 stdout: stderr: Generated rpkg config: [rpkg] preprocess_spec = True # auto-packing is deprecated: auto_pack = True [git] lookaside = https://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(name)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = https://copr-dist-git.fedorainfracloud.org/git/%(module)s Writing config into /tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/.config/rpkg.conf Running: rpkg -C /tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/.config/rpkg.conf sources --outdir /tmp/copr-rpmbuild-j6gjl8sg cmd: ['rpkg', '-C', '/tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/.config/rpkg.conf', 'sources', '--outdir', '/tmp/copr-rpmbuild-j6gjl8sg'] cwd: /tmp/copr-rpmbuild-j6gjl8sg/obtain-sources/gromacs rc: 0 stdout: Downloading gromacs-2020.1.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org Downloading manual-2020.1.pdf from lookaside cache at copr-dist-git.fedorainfracloud.org Downloading regressiontests-2020.1.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org stderr: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=86400): unbuffer mock --buildsrpm --spec /tmp/copr-rpmbuild-j6gjl8sg/gromacs.spec --sources /tmp/copr-rpmbuild-j6gjl8sg --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1583623684.440099 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.0 starting (python version = 3.7.6)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/tmp/copr-rpmbuild-j6gjl8sg/gromacs.spec) Config(1297528-fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623684.440099/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.0 INFO: Mock Version: 2.0 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk Copr repository 7.4 kB/s | 1.6 kB 00:00 fedora 15 MB/s | 66 MB 00:04 Dependencies resolved. ====================================================================================== Package Arch Version Repo Size ====================================================================================== Installing group/module packages: bash aarch64 5.0.11-2.fc32 fedora 1.6 M bzip2 aarch64 1.0.8-2.fc32 fedora 52 k coreutils aarch64 8.31-10.fc32 fedora 1.1 M cpio aarch64 2.13-4.fc32 fedora 280 k diffutils aarch64 3.7-4.fc32 fedora 394 k fedora-release-common noarch 33-0.1 fedora 20 k findutils aarch64 1:4.7.0-3.fc32 fedora 551 k gawk aarch64 5.0.1-7.fc32 fedora 1.2 M glibc-minimal-langpack aarch64 2.31.9000-1.fc33 fedora 65 k grep aarch64 3.3-4.fc32 fedora 248 k gzip aarch64 1.10-2.fc32 fedora 155 k info aarch64 6.7-5.fc32 fedora 224 k make aarch64 1:4.2.1-16.fc32 fedora 493 k patch aarch64 2.7.6-12.fc32 fedora 133 k redhat-rpm-config noarch 153-1.fc33 fedora 64 k rpm-build aarch64 4.15.1-2.fc32.1 fedora 114 k sed aarch64 4.8-1.fc33 fedora 301 k shadow-utils aarch64 2:4.8-4.fc33 fedora 1.2 M tar aarch64 2:1.32-4.fc32 fedora 885 k unzip aarch64 6.0-47.fc32 fedora 178 k util-linux aarch64 2.35.1-5.fc33 fedora 2.7 M which aarch64 2.21-17.fc32 fedora 42 k xz aarch64 5.2.4-8.fc32 fedora 162 k Installing dependencies: alternatives aarch64 1.11-6.fc32 fedora 35 k audit-libs aarch64 3.0-0.18.20191104git1c2f876.fc32 fedora 113 k basesystem noarch 11-9.fc32 fedora 6.8 k binutils aarch64 2.34-2.fc33 fedora 5.8 M binutils-gold aarch64 2.34-2.fc33 fedora 1.0 M bzip2-libs aarch64 1.0.8-2.fc32 fedora 42 k ca-certificates noarch 2020.2.40-3.fc32 fedora 358 k coreutils-common aarch64 8.31-10.fc32 fedora 1.9 M cracklib aarch64 2.9.6-22.fc32 fedora 82 k crypto-policies noarch 20191128-5.gitcd267a5.fc32 fedora 56 k curl aarch64 7.69.0-1.fc33 fedora 289 k cyrus-sasl-lib aarch64 2.1.27-3.fc32 fedora 102 k dwz aarch64 0.13-2.fc32 fedora 107 k efi-srpm-macros noarch 4-4.fc32 fedora 22 k elfutils aarch64 0.178-9.fc32 fedora 528 k elfutils-default-yama-scope noarch 0.178-9.fc32 fedora 17 k elfutils-libelf aarch64 0.178-9.fc32 fedora 191 k elfutils-libs aarch64 0.178-9.fc32 fedora 269 k expat aarch64 2.2.8-2.fc32 fedora 98 k fedora-gpg-keys noarch 33-0.3 fedora 103 k fedora-release noarch 33-0.1 fedora 12 k fedora-repos noarch 33-0.3 fedora 9.9 k fedora-repos-rawhide noarch 33-0.3 fedora 9.1 k file aarch64 5.38-2.fc32 fedora 52 k file-libs aarch64 5.38-2.fc32 fedora 567 k filesystem aarch64 3.14-2.fc32 fedora 1.1 M fonts-srpm-macros noarch 2.0.3-1.fc33 fedora 26 k fpc-srpm-macros noarch 1.3-1.fc32 fedora 7.6 k gc aarch64 8.0.4-3.fc32 fedora 109 k gdb-minimal aarch64 9.1-4.fc33 fedora 3.1 M ghc-srpm-macros noarch 1.5.0-2.fc32 fedora 7.7 k glibc aarch64 2.31.9000-1.fc33 fedora 3.3 M glibc-common aarch64 2.31.9000-1.fc33 fedora 2.0 M gmp aarch64 1:6.2.0-1.fc33 fedora 270 k gnat-srpm-macros noarch 4-11.fc32 fedora 8.2 k go-srpm-macros noarch 3.0.8-5.fc32 fedora 25 k guile22 aarch64 2.2.6-4.fc32 fedora 6.6 M keyutils-libs aarch64 1.6-4.fc32 fedora 31 k krb5-libs aarch64 1.18-5.fc33 fedora 760 k libacl aarch64 2.2.53-5.fc32 fedora 24 k libarchive aarch64 3.4.2-1.fc33 fedora 385 k libattr aarch64 2.4.48-8.fc32 fedora 18 k libblkid aarch64 2.35.1-5.fc33 fedora 151 k libbrotli aarch64 1.0.7-10.fc32 fedora 317 k libcap aarch64 2.26-7.fc32 fedora 52 k libcap-ng aarch64 0.7.10-2.fc32 fedora 27 k libcom_err aarch64 1.45.5-3.fc32 fedora 28 k libcurl aarch64 7.69.0-1.fc33 fedora 263 k libdb aarch64 5.3.28-40.fc32 fedora 739 k libdb-utils aarch64 5.3.28-40.fc32 fedora 143 k libfdisk aarch64 2.35.1-5.fc33 fedora 199 k libffi aarch64 3.1-24.fc32 fedora 33 k libgcc aarch64 10.0.1-0.8.fc33 fedora 75 k libgcrypt aarch64 1.8.5-3.fc32 fedora 411 k libgomp aarch64 10.0.1-0.8.fc33 fedora 237 k libgpg-error aarch64 1.37-1.fc33 fedora 206 k libidn2 aarch64 2.3.0-2.fc32 fedora 103 k libmetalink aarch64 0.1.3-10.fc32 fedora 30 k libmount aarch64 2.35.1-5.fc33 fedora 177 k libnghttp2 aarch64 1.40.0-2.fc32 fedora 79 k libnsl2 aarch64 1.2.0-6.20180605git4a062cf.fc32 fedora 57 k libpkgconf aarch64 1.6.3-3.fc32 fedora 35 k libpsl aarch64 0.21.0-4.fc32 fedora 61 k libpwquality aarch64 1.4.2-2.fc32 fedora 101 k libselinux aarch64 3.0-3.fc32 fedora 85 k libsemanage aarch64 3.0-3.fc32 fedora 121 k libsepol aarch64 3.0-3.fc32 fedora 296 k libsigsegv aarch64 2.11-10.fc32 fedora 26 k libsmartcols aarch64 2.35.1-5.fc33 fedora 118 k libssh aarch64 0.9.3-2.fc32 fedora 212 k libssh-config noarch 0.9.3-2.fc32 fedora 11 k libstdc++ aarch64 10.0.1-0.8.fc33 fedora 577 k libtasn1 aarch64 4.16.0-1.fc32 fedora 72 k libtirpc aarch64 1.2.5-1.rc2.fc33 fedora 98 k libtool-ltdl aarch64 2.4.6-33.fc32 fedora 36 k libunistring aarch64 0.9.10-7.fc32 fedora 510 k libutempter aarch64 1.1.6-18.fc32 fedora 26 k libuuid aarch64 2.35.1-5.fc33 fedora 28 k libverto aarch64 0.3.0-9.fc32 fedora 21 k libxcrypt aarch64 4.4.15-1.fc33 fedora 132 k libxml2 aarch64 2.9.10-4.fc33 fedora 689 k libzstd aarch64 1.4.4-2.fc32 fedora 256 k lua-libs aarch64 5.3.5-7.fc32 fedora 116 k lz4-libs aarch64 1.9.1-2.fc32 fedora 63 k mpfr aarch64 4.0.2-3.fc32 fedora 240 k ncurses aarch64 6.2-1.20200222.fc33 fedora 391 k ncurses-base noarch 6.2-1.20200222.fc33 fedora 59 k ncurses-libs aarch64 6.2-1.20200222.fc33 fedora 315 k nim-srpm-macros noarch 3-2.fc32 fedora 8.3 k ocaml-srpm-macros noarch 6-2.fc32 fedora 7.7 k openblas-srpm-macros noarch 2-7.fc32 fedora 7.2 k openldap aarch64 2.4.47-4.fc32 fedora 299 k openssl-libs aarch64 1:1.1.1d-7.fc33 fedora 1.4 M p11-kit aarch64 0.23.20-1.fc32 fedora 341 k p11-kit-trust aarch64 0.23.20-1.fc32 fedora 142 k pam aarch64 1.3.1-23.fc33 fedora 666 k pcre aarch64 8.44-1.fc33 fedora 181 k pcre2 aarch64 10.34-7.fc33 fedora 248 k perl-srpm-macros noarch 1-34.fc32 fedora 8.3 k pkgconf aarch64 1.6.3-3.fc32 fedora 40 k pkgconf-m4 noarch 1.6.3-3.fc32 fedora 14 k pkgconf-pkg-config aarch64 1.6.3-3.fc32 fedora 9.7 k popt aarch64 1.16-19.fc32 fedora 58 k publicsuffix-list-dafsa noarch 20190417-3.fc32 fedora 56 k python-srpm-macros noarch 3-54.fc32 fedora 17 k qt5-srpm-macros noarch 5.13.2-2.fc32 fedora 8.5 k readline aarch64 8.0-4.fc32 fedora 205 k rpm aarch64 4.15.1-2.fc32.1 fedora 497 k rpm-build-libs aarch64 4.15.1-2.fc32.1 fedora 94 k rpm-libs aarch64 4.15.1-2.fc32.1 fedora 293 k rust-srpm-macros noarch 13-2.fc33 fedora 9.5 k setup noarch 2.13.6-2.fc32 fedora 142 k systemd-libs aarch64 245~rc2-1.fc33 fedora 535 k tzdata noarch 2019c-3.fc32 fedora 429 k xxhash-libs aarch64 0.7.2-3.fc32 fedora 30 k xz-libs aarch64 5.2.4-8.fc32 fedora 89 k zip aarch64 3.0-26.fc32 fedora 259 k zlib aarch64 1.2.11-21.fc32 fedora 97 k zstd aarch64 1.4.4-2.fc32 fedora 322 k Installing Groups: Buildsystem building group Transaction Summary ====================================================================================== Install 142 Packages Total download size: 56 M Installed size: 254 M Downloading Packages: (1/142): basesystem-11-9.fc32.noarch.rpm 39 kB/s | 6.8 kB 00:00 (2/142): alternatives-1.11-6.fc32.aarch64.rpm 188 kB/s | 35 kB 00:00 (3/142): audit-libs-3.0-0.18.20191104git1c2f876 448 kB/s | 113 kB 00:00 (4/142): binutils-gold-2.34-2.fc33.aarch64.rpm 1.0 MB/s | 1.0 MB 00:00 (5/142): bash-5.0.11-2.fc32.aarch64.rpm 1.5 MB/s | 1.6 MB 00:01 (6/142): bzip2-1.0.8-2.fc32.aarch64.rpm 472 kB/s | 52 kB 00:00 (7/142): bzip2-libs-1.0.8-2.fc32.aarch64.rpm 418 kB/s | 42 kB 00:00 (8/142): binutils-2.34-2.fc33.aarch64.rpm 5.0 MB/s | 5.8 MB 00:01 (9/142): ca-certificates-2020.2.40-3.fc32.noarc 2.9 MB/s | 358 kB 00:00 (10/142): coreutils-8.31-10.fc32.aarch64.rpm 7.1 MB/s | 1.1 MB 00:00 (11/142): coreutils-common-8.31-10.fc32.aarch64 13 MB/s | 1.9 MB 00:00 (12/142): cpio-2.13-4.fc32.aarch64.rpm 4.0 MB/s | 280 kB 00:00 (13/142): cracklib-2.9.6-22.fc32.aarch64.rpm 2.1 MB/s | 82 kB 00:00 (14/142): crypto-policies-20191128-5.gitcd267a5 1.1 MB/s | 56 kB 00:00 (15/142): cyrus-sasl-lib-2.1.27-3.fc32.aarch64. 1.1 MB/s | 102 kB 00:00 (16/142): dwz-0.13-2.fc32.aarch64.rpm 2.2 MB/s | 107 kB 00:00 (17/142): curl-7.69.0-1.fc33.aarch64.rpm 1.9 MB/s | 289 kB 00:00 (18/142): diffutils-3.7-4.fc32.aarch64.rpm 3.7 MB/s | 394 kB 00:00 (19/142): efi-srpm-macros-4-4.fc32.noarch.rpm 347 kB/s | 22 kB 00:00 (20/142): elfutils-default-yama-scope-0.178-9.f 241 kB/s | 17 kB 00:00 (21/142): elfutils-0.178-9.fc32.aarch64.rpm 4.7 MB/s | 528 kB 00:00 (22/142): elfutils-libelf-0.178-9.fc32.aarch64. 3.6 MB/s | 191 kB 00:00 (23/142): elfutils-libs-0.178-9.fc32.aarch64.rp 5.6 MB/s | 269 kB 00:00 (24/142): fedora-release-33-0.1.noarch.rpm 185 kB/s | 12 kB 00:00 (25/142): expat-2.2.8-2.fc32.aarch64.rpm 1.3 MB/s | 98 kB 00:00 (26/142): fedora-gpg-keys-33-0.3.noarch.rpm 1.3 MB/s | 103 kB 00:00 (27/142): fedora-release-common-33-0.1.noarch.r 501 kB/s | 20 kB 00:00 (28/142): fedora-repos-33-0.3.noarch.rpm 167 kB/s | 9.9 kB 00:00 (29/142): fedora-repos-rawhide-33-0.3.noarch.rp 136 kB/s | 9.1 kB 00:00 (30/142): file-5.38-2.fc32.aarch64.rpm 697 kB/s | 52 kB 00:00 (31/142): file-libs-5.38-2.fc32.aarch64.rpm 4.0 MB/s | 567 kB 00:00 (32/142): findutils-4.7.0-3.fc32.aarch64.rpm 5.4 MB/s | 551 kB 00:00 (33/142): filesystem-3.14-2.fc32.aarch64.rpm 6.8 MB/s | 1.1 MB 00:00 (34/142): fonts-srpm-macros-2.0.3-1.fc33.noarch 432 kB/s | 26 kB 00:00 (35/142): fpc-srpm-macros-1.3-1.fc32.noarch.rpm 118 kB/s | 7.6 kB 00:00 (36/142): gc-8.0.4-3.fc32.aarch64.rpm 1.4 MB/s | 109 kB 00:00 (37/142): gawk-5.0.1-7.fc32.aarch64.rpm 7.7 MB/s | 1.2 MB 00:00 (38/142): ghc-srpm-macros-1.5.0-2.fc32.noarch.r 103 kB/s | 7.7 kB 00:00 (39/142): gdb-minimal-9.1-4.fc33.aarch64.rpm 20 MB/s | 3.1 MB 00:00 (40/142): glibc-minimal-langpack-2.31.9000-1.fc 781 kB/s | 65 kB 00:00 (41/142): glibc-common-2.31.9000-1.fc33.aarch64 11 MB/s | 2.0 MB 00:00 (42/142): gmp-6.2.0-1.fc33.aarch64.rpm 2.7 MB/s | 270 kB 00:00 (43/142): glibc-2.31.9000-1.fc33.aarch64.rpm 13 MB/s | 3.3 MB 00:00 (44/142): gnat-srpm-macros-4-11.fc32.noarch.rpm 146 kB/s | 8.2 kB 00:00 (45/142): go-srpm-macros-3.0.8-5.fc32.noarch.rp 431 kB/s | 25 kB 00:00 (46/142): grep-3.3-4.fc32.aarch64.rpm 5.5 MB/s | 248 kB 00:00 (47/142): gzip-1.10-2.fc32.aarch64.rpm 1.2 MB/s | 155 kB 00:00 (48/142): info-6.7-5.fc32.aarch64.rpm 1.8 MB/s | 224 kB 00:00 (49/142): keyutils-libs-1.6-4.fc32.aarch64.rpm 319 kB/s | 31 kB 00:00 (50/142): krb5-libs-1.18-5.fc33.aarch64.rpm 6.0 MB/s | 760 kB 00:00 (51/142): guile22-2.2.6-4.fc32.aarch64.rpm 19 MB/s | 6.6 MB 00:00 (52/142): libacl-2.2.53-5.fc32.aarch64.rpm 243 kB/s | 24 kB 00:00 (53/142): libarchive-3.4.2-1.fc33.aarch64.rpm 5.8 MB/s | 385 kB 00:00 (54/142): libattr-2.4.48-8.fc32.aarch64.rpm 223 kB/s | 18 kB 00:00 (55/142): libblkid-2.35.1-5.fc33.aarch64.rpm 1.3 MB/s | 151 kB 00:00 (56/142): libbrotli-1.0.7-10.fc32.aarch64.rpm 2.8 MB/s | 317 kB 00:00 (57/142): libcap-2.26-7.fc32.aarch64.rpm 896 kB/s | 52 kB 00:00 (58/142): libcap-ng-0.7.10-2.fc32.aarch64.rpm 719 kB/s | 27 kB 00:00 (59/142): libcom_err-1.45.5-3.fc32.aarch64.rpm 593 kB/s | 28 kB 00:00 (60/142): libdb-utils-5.3.28-40.fc32.aarch64.rp 1.5 MB/s | 143 kB 00:00 (61/142): libcurl-7.69.0-1.fc33.aarch64.rpm 2.2 MB/s | 263 kB 00:00 (62/142): libdb-5.3.28-40.fc32.aarch64.rpm 6.6 MB/s | 739 kB 00:00 (63/142): libffi-3.1-24.fc32.aarch64.rpm 271 kB/s | 33 kB 00:00 (64/142): libgcc-10.0.1-0.8.fc33.aarch64.rpm 626 kB/s | 75 kB 00:00 (65/142): libfdisk-2.35.1-5.fc33.aarch64.rpm 1.5 MB/s | 199 kB 00:00 (66/142): libgpg-error-1.37-1.fc33.aarch64.rpm 2.2 MB/s | 206 kB 00:00 (67/142): libgomp-10.0.1-0.8.fc33.aarch64.rpm 2.5 MB/s | 237 kB 00:00 (68/142): libgcrypt-1.8.5-3.fc32.aarch64.rpm 4.1 MB/s | 411 kB 00:00 (69/142): libidn2-2.3.0-2.fc32.aarch64.rpm 1.2 MB/s | 103 kB 00:00 (70/142): libmetalink-0.1.3-10.fc32.aarch64.rpm 359 kB/s | 30 kB 00:00 (71/142): libmount-2.35.1-5.fc33.aarch64.rpm 2.1 MB/s | 177 kB 00:00 (72/142): libnghttp2-1.40.0-2.fc32.aarch64.rpm 1.1 MB/s | 79 kB 00:00 (73/142): libnsl2-1.2.0-6.20180605git4a062cf.fc 782 kB/s | 57 kB 00:00 (74/142): libpkgconf-1.6.3-3.fc32.aarch64.rpm 489 kB/s | 35 kB 00:00 (75/142): libpsl-0.21.0-4.fc32.aarch64.rpm 582 kB/s | 61 kB 00:00 (76/142): libselinux-3.0-3.fc32.aarch64.rpm 798 kB/s | 85 kB 00:00 (77/142): libpwquality-1.4.2-2.fc32.aarch64.rpm 930 kB/s | 101 kB 00:00 (78/142): libsigsegv-2.11-10.fc32.aarch64.rpm 526 kB/s | 26 kB 00:00 (79/142): libsemanage-3.0-3.fc32.aarch64.rpm 2.1 MB/s | 121 kB 00:00 (80/142): libsepol-3.0-3.fc32.aarch64.rpm 5.2 MB/s | 296 kB 00:00 (81/142): libssh-config-0.9.3-2.fc32.noarch.rpm 142 kB/s | 11 kB 00:00 (82/142): libsmartcols-2.35.1-5.fc33.aarch64.rp 1.4 MB/s | 118 kB 00:00 (83/142): libssh-0.9.3-2.fc32.aarch64.rpm 2.5 MB/s | 212 kB 00:00 (84/142): 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(142/142): zstd-1.4.4-2.fc32.aarch64.rpm 4.4 MB/s | 322 kB 00:00 -------------------------------------------------------------------------------- Total 10 MB/s | 56 MB 00:05 warning: Generating 18 missing index(es), please wait... warning: /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623684.440099/root/var/cache/dnf/fedora-135a69fc59e3201d/packages/alternatives-1.11-6.fc32.aarch64.rpm: Header V3 RSA/SHA256 Signature, key ID 9570ff31: NOKEY fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x9570FF31: Userid : "Fedora (33) " Fingerprint: 963A 2BEB 0200 9608 FE67 EA42 49FD 7749 9570 FF31 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-33-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-33-primary (0x9570FF31) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x12C944D0: Userid : "Fedora (32) " Fingerprint: 97A1 AE57 C3A2 372C CA3A 4ABA 6C13 026D 12C9 44D0 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-32-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-2.fc32.aarch64 1/1 Preparing : 1/1 Installing : libgcc-10.0.1-0.8.fc33.aarch64 1/142 Running scriptlet: libgcc-10.0.1-0.8.fc33.aarch64 1/142 Installing : tzdata-2019c-3.fc32.noarch 2/142 Installing : rust-srpm-macros-13-2.fc33.noarch 3/142 Installing : qt5-srpm-macros-5.13.2-2.fc32.noarch 4/142 Installing : publicsuffix-list-dafsa-20190417-3.fc32.noarch 5/142 Installing : pkgconf-m4-1.6.3-3.fc32.noarch 6/142 Installing : perl-srpm-macros-1-34.fc32.noarch 7/142 Installing : openblas-srpm-macros-2-7.fc32.noarch 8/142 Installing : ocaml-srpm-macros-6-2.fc32.noarch 9/142 Installing : nim-srpm-macros-3-2.fc32.noarch 10/142 Installing : ncurses-base-6.2-1.20200222.fc33.noarch 11/142 Installing : libssh-config-0.9.3-2.fc32.noarch 12/142 Installing : gnat-srpm-macros-4-11.fc32.noarch 13/142 Installing : ghc-srpm-macros-1.5.0-2.fc32.noarch 14/142 Installing : fpc-srpm-macros-1.3-1.fc32.noarch 15/142 Installing : 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efi-srpm-macros-4-4.fc32.noarch 133/142 Installing : fonts-srpm-macros-2.0.3-1.fc33.noarch 134/142 Installing : go-srpm-macros-3.0.8-5.fc32.noarch 135/142 Installing : python-srpm-macros-3-54.fc32.noarch 136/142 Installing : redhat-rpm-config-153-1.fc33.noarch 137/142 Installing : rpm-build-4.15.1-2.fc32.1.aarch64 138/142 Installing : util-linux-2.35.1-5.fc33.aarch64 139/142 Running scriptlet: util-linux-2.35.1-5.fc33.aarch64 139/142 Installing : make-1:4.2.1-16.fc32.aarch64 140/142 Installing : info-6.7-5.fc32.aarch64 141/142 Installing : which-2.21-17.fc32.aarch64 142/142 Running scriptlet: filesystem-3.14-2.fc32.aarch64 142/142 Running scriptlet: which-2.21-17.fc32.aarch64 142/142 Verifying : alternatives-1.11-6.fc32.aarch64 1/142 Verifying : audit-libs-3.0-0.18.20191104git1c2f876.fc32.aarc 2/142 Verifying : basesystem-11-9.fc32.noarch 3/142 Verifying : bash-5.0.11-2.fc32.aarch64 4/142 Verifying : binutils-2.34-2.fc33.aarch64 5/142 Verifying : binutils-gold-2.34-2.fc33.aarch64 6/142 Verifying : bzip2-1.0.8-2.fc32.aarch64 7/142 Verifying : bzip2-libs-1.0.8-2.fc32.aarch64 8/142 Verifying : ca-certificates-2020.2.40-3.fc32.noarch 9/142 Verifying : coreutils-8.31-10.fc32.aarch64 10/142 Verifying : coreutils-common-8.31-10.fc32.aarch64 11/142 Verifying : cpio-2.13-4.fc32.aarch64 12/142 Verifying : cracklib-2.9.6-22.fc32.aarch64 13/142 Verifying : crypto-policies-20191128-5.gitcd267a5.fc32.noarc 14/142 Verifying : curl-7.69.0-1.fc33.aarch64 15/142 Verifying : cyrus-sasl-lib-2.1.27-3.fc32.aarch64 16/142 Verifying : diffutils-3.7-4.fc32.aarch64 17/142 Verifying : dwz-0.13-2.fc32.aarch64 18/142 Verifying : efi-srpm-macros-4-4.fc32.noarch 19/142 Verifying : elfutils-0.178-9.fc32.aarch64 20/142 Verifying : elfutils-default-yama-scope-0.178-9.fc32.noarch 21/142 Verifying : elfutils-libelf-0.178-9.fc32.aarch64 22/142 Verifying : elfutils-libs-0.178-9.fc32.aarch64 23/142 Verifying : expat-2.2.8-2.fc32.aarch64 24/142 Verifying : fedora-gpg-keys-33-0.3.noarch 25/142 Verifying : fedora-release-33-0.1.noarch 26/142 Verifying : fedora-release-common-33-0.1.noarch 27/142 Verifying : fedora-repos-33-0.3.noarch 28/142 Verifying : fedora-repos-rawhide-33-0.3.noarch 29/142 Verifying : file-5.38-2.fc32.aarch64 30/142 Verifying : file-libs-5.38-2.fc32.aarch64 31/142 Verifying : filesystem-3.14-2.fc32.aarch64 32/142 Verifying : findutils-1:4.7.0-3.fc32.aarch64 33/142 Verifying : fonts-srpm-macros-2.0.3-1.fc33.noarch 34/142 Verifying : fpc-srpm-macros-1.3-1.fc32.noarch 35/142 Verifying : gawk-5.0.1-7.fc32.aarch64 36/142 Verifying : gc-8.0.4-3.fc32.aarch64 37/142 Verifying : gdb-minimal-9.1-4.fc33.aarch64 38/142 Verifying : ghc-srpm-macros-1.5.0-2.fc32.noarch 39/142 Verifying : glibc-2.31.9000-1.fc33.aarch64 40/142 Verifying : glibc-common-2.31.9000-1.fc33.aarch64 41/142 Verifying : glibc-minimal-langpack-2.31.9000-1.fc33.aarch64 42/142 Verifying : gmp-1:6.2.0-1.fc33.aarch64 43/142 Verifying : gnat-srpm-macros-4-11.fc32.noarch 44/142 Verifying : go-srpm-macros-3.0.8-5.fc32.noarch 45/142 Verifying : grep-3.3-4.fc32.aarch64 46/142 Verifying : guile22-2.2.6-4.fc32.aarch64 47/142 Verifying : gzip-1.10-2.fc32.aarch64 48/142 Verifying : info-6.7-5.fc32.aarch64 49/142 Verifying : keyutils-libs-1.6-4.fc32.aarch64 50/142 Verifying : krb5-libs-1.18-5.fc33.aarch64 51/142 Verifying : libacl-2.2.53-5.fc32.aarch64 52/142 Verifying : libarchive-3.4.2-1.fc33.aarch64 53/142 Verifying : libattr-2.4.48-8.fc32.aarch64 54/142 Verifying : libblkid-2.35.1-5.fc33.aarch64 55/142 Verifying : libbrotli-1.0.7-10.fc32.aarch64 56/142 Verifying : libcap-2.26-7.fc32.aarch64 57/142 Verifying : libcap-ng-0.7.10-2.fc32.aarch64 58/142 Verifying : libcom_err-1.45.5-3.fc32.aarch64 59/142 Verifying : libcurl-7.69.0-1.fc33.aarch64 60/142 Verifying : libdb-5.3.28-40.fc32.aarch64 61/142 Verifying : libdb-utils-5.3.28-40.fc32.aarch64 62/142 Verifying : libfdisk-2.35.1-5.fc33.aarch64 63/142 Verifying : libffi-3.1-24.fc32.aarch64 64/142 Verifying : libgcc-10.0.1-0.8.fc33.aarch64 65/142 Verifying : libgcrypt-1.8.5-3.fc32.aarch64 66/142 Verifying : libgomp-10.0.1-0.8.fc33.aarch64 67/142 Verifying : libgpg-error-1.37-1.fc33.aarch64 68/142 Verifying : libidn2-2.3.0-2.fc32.aarch64 69/142 Verifying : libmetalink-0.1.3-10.fc32.aarch64 70/142 Verifying : libmount-2.35.1-5.fc33.aarch64 71/142 Verifying : libnghttp2-1.40.0-2.fc32.aarch64 72/142 Verifying : libnsl2-1.2.0-6.20180605git4a062cf.fc32.aarch64 73/142 Verifying : libpkgconf-1.6.3-3.fc32.aarch64 74/142 Verifying : libpsl-0.21.0-4.fc32.aarch64 75/142 Verifying : libpwquality-1.4.2-2.fc32.aarch64 76/142 Verifying : libselinux-3.0-3.fc32.aarch64 77/142 Verifying : libsemanage-3.0-3.fc32.aarch64 78/142 Verifying : libsepol-3.0-3.fc32.aarch64 79/142 Verifying : libsigsegv-2.11-10.fc32.aarch64 80/142 Verifying : libsmartcols-2.35.1-5.fc33.aarch64 81/142 Verifying : libssh-0.9.3-2.fc32.aarch64 82/142 Verifying : libssh-config-0.9.3-2.fc32.noarch 83/142 Verifying : libstdc++-10.0.1-0.8.fc33.aarch64 84/142 Verifying : libtasn1-4.16.0-1.fc32.aarch64 85/142 Verifying : libtirpc-1.2.5-1.rc2.fc33.aarch64 86/142 Verifying : libtool-ltdl-2.4.6-33.fc32.aarch64 87/142 Verifying : libunistring-0.9.10-7.fc32.aarch64 88/142 Verifying : libutempter-1.1.6-18.fc32.aarch64 89/142 Verifying : libuuid-2.35.1-5.fc33.aarch64 90/142 Verifying : libverto-0.3.0-9.fc32.aarch64 91/142 Verifying : libxcrypt-4.4.15-1.fc33.aarch64 92/142 Verifying : libxml2-2.9.10-4.fc33.aarch64 93/142 Verifying : libzstd-1.4.4-2.fc32.aarch64 94/142 Verifying : lua-libs-5.3.5-7.fc32.aarch64 95/142 Verifying : lz4-libs-1.9.1-2.fc32.aarch64 96/142 Verifying : make-1:4.2.1-16.fc32.aarch64 97/142 Verifying : mpfr-4.0.2-3.fc32.aarch64 98/142 Verifying : ncurses-6.2-1.20200222.fc33.aarch64 99/142 Verifying : ncurses-base-6.2-1.20200222.fc33.noarch 100/142 Verifying : ncurses-libs-6.2-1.20200222.fc33.aarch64 101/142 Verifying : nim-srpm-macros-3-2.fc32.noarch 102/142 Verifying : ocaml-srpm-macros-6-2.fc32.noarch 103/142 Verifying : openblas-srpm-macros-2-7.fc32.noarch 104/142 Verifying : openldap-2.4.47-4.fc32.aarch64 105/142 Verifying : openssl-libs-1:1.1.1d-7.fc33.aarch64 106/142 Verifying : p11-kit-0.23.20-1.fc32.aarch64 107/142 Verifying : p11-kit-trust-0.23.20-1.fc32.aarch64 108/142 Verifying : pam-1.3.1-23.fc33.aarch64 109/142 Verifying : patch-2.7.6-12.fc32.aarch64 110/142 Verifying : pcre-8.44-1.fc33.aarch64 111/142 Verifying : pcre2-10.34-7.fc33.aarch64 112/142 Verifying : perl-srpm-macros-1-34.fc32.noarch 113/142 Verifying : pkgconf-1.6.3-3.fc32.aarch64 114/142 Verifying : pkgconf-m4-1.6.3-3.fc32.noarch 115/142 Verifying : pkgconf-pkg-config-1.6.3-3.fc32.aarch64 116/142 Verifying : popt-1.16-19.fc32.aarch64 117/142 Verifying : publicsuffix-list-dafsa-20190417-3.fc32.noarch 118/142 Verifying : python-srpm-macros-3-54.fc32.noarch 119/142 Verifying : qt5-srpm-macros-5.13.2-2.fc32.noarch 120/142 Verifying : readline-8.0-4.fc32.aarch64 121/142 Verifying : redhat-rpm-config-153-1.fc33.noarch 122/142 Verifying : rpm-4.15.1-2.fc32.1.aarch64 123/142 Verifying : rpm-build-4.15.1-2.fc32.1.aarch64 124/142 Verifying : rpm-build-libs-4.15.1-2.fc32.1.aarch64 125/142 Verifying : rpm-libs-4.15.1-2.fc32.1.aarch64 126/142 Verifying : rust-srpm-macros-13-2.fc33.noarch 127/142 Verifying : sed-4.8-1.fc33.aarch64 128/142 Verifying : setup-2.13.6-2.fc32.noarch 129/142 Verifying : shadow-utils-2:4.8-4.fc33.aarch64 130/142 Verifying : systemd-libs-245~rc2-1.fc33.aarch64 131/142 Verifying : tar-2:1.32-4.fc32.aarch64 132/142 Verifying : tzdata-2019c-3.fc32.noarch 133/142 Verifying : unzip-6.0-47.fc32.aarch64 134/142 Verifying : util-linux-2.35.1-5.fc33.aarch64 135/142 Verifying : which-2.21-17.fc32.aarch64 136/142 Verifying : xxhash-libs-0.7.2-3.fc32.aarch64 137/142 Verifying : xz-5.2.4-8.fc32.aarch64 138/142 Verifying : xz-libs-5.2.4-8.fc32.aarch64 139/142 Verifying : zip-3.0-26.fc32.aarch64 140/142 Verifying : zlib-1.2.11-21.fc32.aarch64 141/142 Verifying : zstd-1.4.4-2.fc32.aarch64 142/142 Installed: alternatives-1.11-6.fc32.aarch64 audit-libs-3.0-0.18.20191104git1c2f876.fc32.aarch64 basesystem-11-9.fc32.noarch bash-5.0.11-2.fc32.aarch64 binutils-2.34-2.fc33.aarch64 binutils-gold-2.34-2.fc33.aarch64 bzip2-1.0.8-2.fc32.aarch64 bzip2-libs-1.0.8-2.fc32.aarch64 ca-certificates-2020.2.40-3.fc32.noarch coreutils-8.31-10.fc32.aarch64 coreutils-common-8.31-10.fc32.aarch64 cpio-2.13-4.fc32.aarch64 cracklib-2.9.6-22.fc32.aarch64 crypto-policies-20191128-5.gitcd267a5.fc32.noarch curl-7.69.0-1.fc33.aarch64 cyrus-sasl-lib-2.1.27-3.fc32.aarch64 diffutils-3.7-4.fc32.aarch64 dwz-0.13-2.fc32.aarch64 efi-srpm-macros-4-4.fc32.noarch elfutils-0.178-9.fc32.aarch64 elfutils-default-yama-scope-0.178-9.fc32.noarch elfutils-libelf-0.178-9.fc32.aarch64 elfutils-libs-0.178-9.fc32.aarch64 expat-2.2.8-2.fc32.aarch64 fedora-gpg-keys-33-0.3.noarch fedora-release-33-0.1.noarch fedora-release-common-33-0.1.noarch fedora-repos-33-0.3.noarch fedora-repos-rawhide-33-0.3.noarch file-5.38-2.fc32.aarch64 file-libs-5.38-2.fc32.aarch64 filesystem-3.14-2.fc32.aarch64 findutils-1:4.7.0-3.fc32.aarch64 fonts-srpm-macros-2.0.3-1.fc33.noarch fpc-srpm-macros-1.3-1.fc32.noarch gawk-5.0.1-7.fc32.aarch64 gc-8.0.4-3.fc32.aarch64 gdb-minimal-9.1-4.fc33.aarch64 ghc-srpm-macros-1.5.0-2.fc32.noarch glibc-2.31.9000-1.fc33.aarch64 glibc-common-2.31.9000-1.fc33.aarch64 glibc-minimal-langpack-2.31.9000-1.fc33.aarch64 gmp-1:6.2.0-1.fc33.aarch64 gnat-srpm-macros-4-11.fc32.noarch go-srpm-macros-3.0.8-5.fc32.noarch grep-3.3-4.fc32.aarch64 guile22-2.2.6-4.fc32.aarch64 gzip-1.10-2.fc32.aarch64 info-6.7-5.fc32.aarch64 keyutils-libs-1.6-4.fc32.aarch64 krb5-libs-1.18-5.fc33.aarch64 libacl-2.2.53-5.fc32.aarch64 libarchive-3.4.2-1.fc33.aarch64 libattr-2.4.48-8.fc32.aarch64 libblkid-2.35.1-5.fc33.aarch64 libbrotli-1.0.7-10.fc32.aarch64 libcap-2.26-7.fc32.aarch64 libcap-ng-0.7.10-2.fc32.aarch64 libcom_err-1.45.5-3.fc32.aarch64 libcurl-7.69.0-1.fc33.aarch64 libdb-5.3.28-40.fc32.aarch64 libdb-utils-5.3.28-40.fc32.aarch64 libfdisk-2.35.1-5.fc33.aarch64 libffi-3.1-24.fc32.aarch64 libgcc-10.0.1-0.8.fc33.aarch64 libgcrypt-1.8.5-3.fc32.aarch64 libgomp-10.0.1-0.8.fc33.aarch64 libgpg-error-1.37-1.fc33.aarch64 libidn2-2.3.0-2.fc32.aarch64 libmetalink-0.1.3-10.fc32.aarch64 libmount-2.35.1-5.fc33.aarch64 libnghttp2-1.40.0-2.fc32.aarch64 libnsl2-1.2.0-6.20180605git4a062cf.fc32.aarch64 libpkgconf-1.6.3-3.fc32.aarch64 libpsl-0.21.0-4.fc32.aarch64 libpwquality-1.4.2-2.fc32.aarch64 libselinux-3.0-3.fc32.aarch64 libsemanage-3.0-3.fc32.aarch64 libsepol-3.0-3.fc32.aarch64 libsigsegv-2.11-10.fc32.aarch64 libsmartcols-2.35.1-5.fc33.aarch64 libssh-0.9.3-2.fc32.aarch64 libssh-config-0.9.3-2.fc32.noarch libstdc++-10.0.1-0.8.fc33.aarch64 libtasn1-4.16.0-1.fc32.aarch64 libtirpc-1.2.5-1.rc2.fc33.aarch64 libtool-ltdl-2.4.6-33.fc32.aarch64 libunistring-0.9.10-7.fc32.aarch64 libutempter-1.1.6-18.fc32.aarch64 libuuid-2.35.1-5.fc33.aarch64 libverto-0.3.0-9.fc32.aarch64 libxcrypt-4.4.15-1.fc33.aarch64 libxml2-2.9.10-4.fc33.aarch64 libzstd-1.4.4-2.fc32.aarch64 lua-libs-5.3.5-7.fc32.aarch64 lz4-libs-1.9.1-2.fc32.aarch64 make-1:4.2.1-16.fc32.aarch64 mpfr-4.0.2-3.fc32.aarch64 ncurses-6.2-1.20200222.fc33.aarch64 ncurses-base-6.2-1.20200222.fc33.noarch ncurses-libs-6.2-1.20200222.fc33.aarch64 nim-srpm-macros-3-2.fc32.noarch ocaml-srpm-macros-6-2.fc32.noarch openblas-srpm-macros-2-7.fc32.noarch openldap-2.4.47-4.fc32.aarch64 openssl-libs-1:1.1.1d-7.fc33.aarch64 p11-kit-0.23.20-1.fc32.aarch64 p11-kit-trust-0.23.20-1.fc32.aarch64 pam-1.3.1-23.fc33.aarch64 patch-2.7.6-12.fc32.aarch64 pcre-8.44-1.fc33.aarch64 pcre2-10.34-7.fc33.aarch64 perl-srpm-macros-1-34.fc32.noarch pkgconf-1.6.3-3.fc32.aarch64 pkgconf-m4-1.6.3-3.fc32.noarch pkgconf-pkg-config-1.6.3-3.fc32.aarch64 popt-1.16-19.fc32.aarch64 publicsuffix-list-dafsa-20190417-3.fc32.noarch python-srpm-macros-3-54.fc32.noarch qt5-srpm-macros-5.13.2-2.fc32.noarch readline-8.0-4.fc32.aarch64 redhat-rpm-config-153-1.fc33.noarch rpm-4.15.1-2.fc32.1.aarch64 rpm-build-4.15.1-2.fc32.1.aarch64 rpm-build-libs-4.15.1-2.fc32.1.aarch64 rpm-libs-4.15.1-2.fc32.1.aarch64 rust-srpm-macros-13-2.fc33.noarch sed-4.8-1.fc33.aarch64 setup-2.13.6-2.fc32.noarch shadow-utils-2:4.8-4.fc33.aarch64 systemd-libs-245~rc2-1.fc33.aarch64 tar-2:1.32-4.fc32.aarch64 tzdata-2019c-3.fc32.noarch unzip-6.0-47.fc32.aarch64 util-linux-2.35.1-5.fc33.aarch64 which-2.21-17.fc32.aarch64 xxhash-libs-0.7.2-3.fc32.aarch64 xz-5.2.4-8.fc32.aarch64 xz-libs-5.2.4-8.fc32.aarch64 zip-3.0-26.fc32.aarch64 zlib-1.2.11-21.fc32.aarch64 zstd-1.4.4-2.fc32.aarch64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1583193600 Wrote: /builddir/build/SRPMS/gromacs-2020.1-1.fc33.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623684.440099/root/var/log/dnf.rpm.log /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623684.440099/root/var/log/dnf.librepo.log /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623684.440099/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/copr-rpmbuild-j6gjl8sg/gromacs.spec) Config(child) 1 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=86400): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/gromacs-2020.1-1.fc33.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1583623758.278817 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.0 starting (python version = 3.7.6)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/gromacs-2020.1-1.fc33.src.rpm) Config(1297528-fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623758.278817/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.0 INFO: Mock Version: 2.0 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk Copr repository 32 kB/s | 3.3 kB 00:00 fedora 47 kB/s | 14 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for gromacs-2020.1-1.fc33.src.rpm Start: build setup for gromacs-2020.1-1.fc33.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1583193600 Wrote: /builddir/build/SRPMS/gromacs-2020.1-1.fc33.src.rpm No matches found for the following disable plugin patterns: local, spacewalk Copr repository 58 kB/s | 3.3 kB 00:00 fedora 264 kB/s | 14 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bash-completion noarch 1:2.8-8.fc32 fedora 262 k cmake aarch64 3.17.0-0.3.rc2.fc33 fedora 5.5 M fftw-devel aarch64 3.3.8-7.fc32 fedora 129 k gcc-c++ aarch64 10.0.1-0.8.fc33 fedora 11 M gsl-devel aarch64 2.6-2.fc32 fedora 591 k hwloc aarch64 2.0.4-3.fc32 fedora 129 k hwloc-devel aarch64 2.0.4-3.fc32 fedora 220 k libX11-devel aarch64 1.6.9-3.fc32 fedora 938 k lmfit-devel aarch64 8.2.2-2.fc32 fedora 40 k mpich-devel aarch64 3.3.2-4.fc33 fedora 900 k ocl-icd-devel aarch64 2.2.12-9.fc32 fedora 16 k openblas-devel aarch64 0.3.9-1.fc33 fedora 72 k opencl-headers noarch 2.2-6.20190205git49f07d3.fc32 fedora 79 k openmpi-devel aarch64 4.0.3rc4-1.fc33 fedora 1.2 M tng-devel aarch64 1.8.2-6.fc32 fedora 30 k Installing dependencies: Lmod aarch64 8.3.1-2.fc33 fedora 212 k acl aarch64 2.2.53-5.fc32 fedora 72 k annobin aarch64 9.12-1.fc33 fedora 111 k autoconf noarch 2.69-32.fc32 fedora 666 k automake noarch 1.16.1-14.fc32 fedora 665 k cmake-data noarch 3.17.0-0.3.rc2.fc33 fedora 1.4 M cmake-filesystem aarch64 3.17.0-0.3.rc2.fc33 fedora 14 k cmake-rpm-macros noarch 3.17.0-0.3.rc2.fc33 fedora 13 k cpp aarch64 10.0.1-0.8.fc33 fedora 9.0 M cryptsetup-libs aarch64 2.3.0-1.fc32 fedora 446 k dbus aarch64 1:1.12.16-5.fc33 fedora 10 k dbus-broker aarch64 22-1.fc33 fedora 168 k dbus-common noarch 1:1.12.16-5.fc33 fedora 17 k device-mapper aarch64 1.02.167-2.fc32 fedora 140 k device-mapper-libs aarch64 1.02.167-2.fc32 fedora 173 k dracut aarch64 050-1.fc33 fedora 319 k emacs-filesystem noarch 1:26.3-2.fc32 fedora 8.5 k fftw aarch64 3.3.8-7.fc32 fedora 44 k fftw-libs aarch64 3.3.8-7.fc32 fedora 7.7 k fftw-libs-double aarch64 3.3.8-7.fc32 fedora 626 k fftw-libs-long aarch64 3.3.8-7.fc32 fedora 951 k fftw-libs-single aarch64 3.3.8-7.fc32 fedora 622 k fipscheck aarch64 1.5.0-8.fc32 fedora 26 k fipscheck-lib aarch64 1.5.0-8.fc32 fedora 13 k gcc aarch64 10.0.1-0.8.fc33 fedora 27 M gcc-gfortran aarch64 10.0.1-0.8.fc33 fedora 10 M gdbm-libs aarch64 1:1.18.1-3.fc32 fedora 53 k glibc-devel aarch64 2.31.9000-1.fc33 fedora 1.0 M glibc-headers aarch64 2.31.9000-1.fc33 fedora 460 k gnutls aarch64 3.6.12-1.fc32 fedora 936 k groff-base aarch64 1.22.3-24.fc33 fedora 1.0 M gsl aarch64 2.6-2.fc32 fedora 1.0 M hwdata noarch 0.333-1.fc33 fedora 1.4 M hwloc-libs aarch64 2.0.4-3.fc32 fedora 2.0 M ibacm aarch64 28.0-1.fc33 fedora 89 k infiniband-diags aarch64 28.0-1.fc33 fedora 319 k iptables-libs aarch64 1.8.4-7.fc33 fedora 371 k isl aarch64 0.16.1-10.fc32 fedora 831 k json-c aarch64 0.13.1-9.fc32 fedora 37 k jsoncpp aarch64 1.9.2-2.fc33 fedora 92 k kbd aarch64 2.2.0-1.fc32 fedora 376 k kbd-legacy noarch 2.2.0-1.fc32 fedora 473 k kbd-misc noarch 2.2.0-1.fc32 fedora 1.5 M kernel-headers aarch64 5.6.0-0.rc4.git0.1.fc33 fedora 1.1 M kmod aarch64 27-1.fc33 fedora 123 k kmod-libs aarch64 27-1.fc33 fedora 63 k libX11 aarch64 1.6.9-3.fc32 fedora 653 k libX11-common noarch 1.6.9-3.fc32 fedora 153 k libX11-xcb aarch64 1.6.9-3.fc32 fedora 11 k libXau aarch64 1.0.9-3.fc32 fedora 31 k libXau-devel aarch64 1.0.9-3.fc32 fedora 14 k libargon2 aarch64 20171227-4.fc32 fedora 30 k libasan aarch64 10.0.1-0.8.fc33 fedora 397 k libatomic aarch64 10.0.1-0.8.fc33 fedora 24 k libcbor aarch64 0.5.0-7.fc33 fedora 45 k libedit aarch64 3.1-32.20191231cvs.fc32 fedora 105 k libevent aarch64 2.1.8-8.fc32 fedora 242 k libfabric aarch64 1.9.1rc1-1.fc33 fedora 495 k libfido2 aarch64 1.3.1-1.fc33 fedora 63 k libgfortran aarch64 10.0.1-0.8.fc33 fedora 408 k libibumad aarch64 28.0-1.fc33 fedora 25 k libibverbs aarch64 28.0-1.fc33 fedora 310 k libkcapi aarch64 1.1.5-2.fc32 fedora 45 k libkcapi-hmaccalc aarch64 1.1.5-2.fc32 fedora 27 k libmnl aarch64 1.0.4-11.fc32 fedora 28 k libmpc aarch64 1.1.0-8.fc32 fedora 60 k libnetfilter_conntrack aarch64 1.0.7-4.fc32 fedora 61 k libnfnetlink aarch64 1.0.1-17.fc32 fedora 29 k libnl3 aarch64 3.5.0-2.fc32 fedora 318 k libpcap aarch64 14:1.9.1-3.fc33 fedora 167 k librdmacm aarch64 28.0-1.fc33 fedora 70 k libseccomp aarch64 2.4.2-3.fc32 fedora 78 k libstdc++-devel aarch64 10.0.1-0.8.fc33 fedora 2.0 M libubsan aarch64 10.0.1-0.8.fc33 fedora 167 k libuv aarch64 1:1.34.2-1.fc32 fedora 142 k libxcb aarch64 1.13.1-4.fc32 fedora 230 k libxcb-devel aarch64 1.13.1-4.fc32 fedora 1.0 M libxcrypt-devel aarch64 4.4.15-1.fc33 fedora 34 k lmfit aarch64 8.2.2-2.fc32 fedora 26 k lua aarch64 5.3.5-7.fc32 fedora 182 k lua-filesystem aarch64 1.6.3-12.fc32 fedora 33 k lua-json noarch 1.3.2-14.fc32 fedora 26 k lua-lpeg aarch64 1.0.2-2.fc32 fedora 67 k lua-posix aarch64 33.3.1-16.fc32 fedora 176 k lua-term aarch64 0.07-10.fc32 fedora 15 k m4 aarch64 1.4.18-12.fc32 fedora 215 k mpich aarch64 3.3.2-4.fc33 fedora 1.3 M munge-libs aarch64 0.5.13-7.fc32 fedora 26 k nettle aarch64 3.5.1-5.fc32 fedora 322 k numactl-libs aarch64 2.0.12-4.fc32 fedora 30 k ocl-icd aarch64 2.2.12-9.fc32 fedora 46 k openblas aarch64 0.3.9-1.fc33 fedora 30 k openblas-openmp aarch64 0.3.9-1.fc33 fedora 3.1 M openblas-openmp64 aarch64 0.3.9-1.fc33 fedora 3.0 M openblas-openmp64_ aarch64 0.3.9-1.fc33 fedora 3.0 M openblas-serial aarch64 0.3.9-1.fc33 fedora 3.0 M openblas-serial64 aarch64 0.3.9-1.fc33 fedora 2.9 M openblas-serial64_ aarch64 0.3.9-1.fc33 fedora 2.9 M openblas-threads aarch64 0.3.9-1.fc33 fedora 3.1 M openblas-threads64 aarch64 0.3.9-1.fc33 fedora 3.0 M openblas-threads64_ aarch64 0.3.9-1.fc33 fedora 3.0 M openmpi aarch64 4.0.3rc4-1.fc33 fedora 2.6 M opensm-libs aarch64 3.3.22-3.fc32 fedora 72 k openssh aarch64 8.2p1-2.fc33 fedora 475 k openssh-clients aarch64 8.2p1-2.fc33 fedora 650 k orangefs aarch64 2.9.7-6.fc31 fedora 1.8 M pciutils aarch64 3.6.4-1.fc33 fedora 89 k pciutils-libs aarch64 3.6.4-1.fc33 fedora 40 k perl-Carp noarch 1.50-440.fc32 fedora 29 k perl-Data-Dumper aarch64 2.174-443.fc32 fedora 55 k perl-Encode aarch64 4:3.03-442.fc33 fedora 1.7 M perl-Errno aarch64 1.30-450.fc32 fedora 24 k perl-Exporter noarch 5.74-2.fc32 fedora 32 k perl-File-Path noarch 2.16-440.fc32 fedora 36 k perl-File-Temp noarch 1:0.230.900-440.fc32 fedora 60 k perl-Getopt-Long noarch 1:2.51-2.fc32 fedora 61 k perl-HTTP-Tiny noarch 0.076-440.fc32 fedora 55 k perl-IO aarch64 1.40-450.fc32 fedora 90 k perl-MIME-Base64 aarch64 3.15-440.fc32 fedora 30 k perl-PathTools aarch64 3.78-441.fc32 fedora 86 k perl-Pod-Escapes noarch 1:1.07-440.fc32 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-444.fc33 fedora 85 k perl-Pod-Simple noarch 1:3.40-2.fc32 fedora 215 k perl-Pod-Usage noarch 4:1.69-440.fc32 fedora 32 k perl-Scalar-List-Utils aarch64 3:1.54-440.fc32 fedora 67 k perl-Socket aarch64 4:2.029-5.fc32 fedora 55 k perl-Storable aarch64 1:3.15-443.fc32 fedora 95 k perl-Term-ANSIColor noarch 5.01-2.fc32 fedora 49 k perl-Term-Cap noarch 1.17-440.fc32 fedora 22 k perl-Text-ParseWords noarch 3.30-440.fc32 fedora 16 k perl-Text-Tabs+Wrap noarch 2013.0523-440.fc32 fedora 23 k perl-Thread-Queue noarch 3.13-440.fc32 fedora 21 k perl-Time-Local noarch 2:1.300-2.fc32 fedora 34 k perl-Unicode-Normalize aarch64 1.26-440.fc32 fedora 93 k perl-constant noarch 1.33-441.fc32 fedora 23 k perl-interpreter aarch64 4:5.30.1-450.fc32 fedora 6.0 M perl-libs aarch64 4:5.30.1-450.fc32 fedora 1.7 M perl-macros aarch64 4:5.30.1-450.fc32 fedora 20 k perl-parent noarch 1:0.238-1.fc32 fedora 14 k perl-podlators noarch 1:4.14-2.fc32 fedora 113 k perl-threads aarch64 1:2.22-442.fc32 fedora 57 k perl-threads-shared aarch64 1.60-441.fc32 fedora 44 k pmix aarch64 3.1.5-1.fc33 fedora 505 k procps-ng aarch64 3.3.15-7.fc32 fedora 331 k python-pip-wheel noarch 19.3.1-2.fc32 fedora 1.2 M python-setuptools-wheel noarch 45.2.0-1.fc33 fedora 294 k python3 aarch64 3.8.2-2.fc33 fedora 30 k python3-libs aarch64 3.8.2-2.fc33 fedora 7.4 M qrencode-libs aarch64 4.0.2-5.fc32 fedora 60 k rdma-core aarch64 28.0-1.fc33 fedora 59 k rdma-core-devel aarch64 28.0-1.fc33 fedora 299 k rhash aarch64 1.3.8-3.fc32 fedora 180 k rpm-mpi-hooks noarch 6-5.fc32 fedora 11 k sqlite-libs aarch64 3.31.1-1.fc32 fedora 611 k systemd aarch64 245~rc2-1.fc33 fedora 3.9 M systemd-pam aarch64 245~rc2-1.fc33 fedora 286 k systemd-rpm-macros noarch 245~rc2-1.fc33 fedora 26 k systemd-udev aarch64 245~rc2-1.fc33 fedora 1.4 M tcl aarch64 1:8.6.10-1.fc32 fedora 1.1 M tcsh aarch64 6.22.02-3.fc32 fedora 448 k tng aarch64 1.8.2-6.fc32 fedora 133 k ucx aarch64 1.6.1-2.fc32 fedora 371 k xorg-x11-proto-devel noarch 2019.1-3.fc32 fedora 262 k Transaction Summary ================================================================================ Install 178 Packages Total download size: 159 M Installed size: 582 M Downloading Packages: (1/178): acl-2.2.53-5.fc32.aarch64.rpm 278 kB/s | 72 kB 00:00 (2/178): Lmod-8.3.1-2.fc33.aarch64.rpm 731 kB/s | 212 kB 00:00 (3/178): annobin-9.12-1.fc33.aarch64.rpm 354 kB/s | 111 kB 00:00 (4/178): autoconf-2.69-32.fc32.noarch.rpm 3.9 MB/s | 666 kB 00:00 (5/178): automake-1.16.1-14.fc32.noarch.rpm 3.4 MB/s | 665 kB 00:00 (6/178): bash-completion-2.8-8.fc32.noarch.rpm 1.3 MB/s | 262 kB 00:00 (7/178): cmake-filesystem-3.17.0-0.3.rc2.fc33.a 388 kB/s | 14 kB 00:00 (8/178): cmake-data-3.17.0-0.3.rc2.fc33.noarch. 20 MB/s | 1.4 MB 00:00 (9/178): cmake-rpm-macros-3.17.0-0.3.rc2.fc33.n 329 kB/s | 13 kB 00:00 (10/178): cmake-3.17.0-0.3.rc2.fc33.aarch64.rpm 21 MB/s | 5.5 MB 00:00 (11/178): cryptsetup-libs-2.3.0-1.fc32.aarch64. 2.6 MB/s | 446 kB 00:00 (12/178): cpp-10.0.1-0.8.fc33.aarch64.rpm 34 MB/s | 9.0 MB 00:00 (13/178): dbus-1.12.16-5.fc33.aarch64.rpm 77 kB/s | 10 kB 00:00 (14/178): dbus-broker-22-1.fc33.aarch64.rpm 2.1 MB/s | 168 kB 00:00 (15/178): dbus-common-1.12.16-5.fc33.noarch.rpm 535 kB/s | 17 kB 00:00 (16/178): device-mapper-1.02.167-2.fc32.aarch64 2.1 MB/s | 140 kB 00:00 (17/178): device-mapper-libs-1.02.167-2.fc32.aa 2.6 MB/s | 173 kB 00:00 (18/178): dracut-050-1.fc33.aarch64.rpm 6.0 MB/s | 319 kB 00:00 (19/178): emacs-filesystem-26.3-2.fc32.noarch.r 118 kB/s | 8.5 kB 00:00 (20/178): fftw-3.3.8-7.fc32.aarch64.rpm 439 kB/s | 44 kB 00:00 (21/178): fftw-devel-3.3.8-7.fc32.aarch64.rpm 1.0 MB/s | 129 kB 00:00 (22/178): fftw-libs-double-3.3.8-7.fc32.aarch64 8.9 MB/s | 626 kB 00:00 (23/178): fftw-libs-3.3.8-7.fc32.aarch64.rpm 75 kB/s | 7.7 kB 00:00 (24/178): fftw-libs-long-3.3.8-7.fc32.aarch64.r 20 MB/s | 951 kB 00:00 (25/178): fftw-libs-single-3.3.8-7.fc32.aarch64 7.9 MB/s | 622 kB 00:00 (26/178): fipscheck-lib-1.5.0-8.fc32.aarch64.rp 150 kB/s | 13 kB 00:00 (27/178): fipscheck-1.5.0-8.fc32.aarch64.rpm 239 kB/s | 26 kB 00:00 (28/178): gcc-gfortran-10.0.1-0.8.fc33.aarch64. 29 MB/s | 10 MB 00:00 (29/178): gcc-c++-10.0.1-0.8.fc33.aarch64.rpm 24 MB/s | 11 MB 00:00 (30/178): gdbm-libs-1.18.1-3.fc32.aarch64.rpm 679 kB/s | 53 kB 00:00 (31/178): glibc-headers-2.31.9000-1.fc33.aarch6 5.9 MB/s | 460 kB 00:00 (32/178): glibc-devel-2.31.9000-1.fc33.aarch64. 12 MB/s | 1.0 MB 00:00 (33/178): gnutls-3.6.12-1.fc32.aarch64.rpm 13 MB/s | 936 kB 00:00 (34/178): groff-base-1.22.3-24.fc33.aarch64.rpm 10 MB/s | 1.0 MB 00:00 (35/178): gcc-10.0.1-0.8.fc33.aarch64.rpm 33 MB/s | 27 MB 00:00 (36/178): gsl-devel-2.6-2.fc32.aarch64.rpm 3.3 MB/s | 591 kB 00:00 (37/178): gsl-2.6-2.fc32.aarch64.rpm 4.6 MB/s | 1.0 MB 00:00 (38/178): hwdata-0.333-1.fc33.noarch.rpm 10 MB/s | 1.4 MB 00:00 (39/178): hwloc-2.0.4-3.fc32.aarch64.rpm 1.0 MB/s | 129 kB 00:00 (40/178): hwloc-devel-2.0.4-3.fc32.aarch64.rpm 1.8 MB/s | 220 kB 00:00 (41/178): ibacm-28.0-1.fc33.aarch64.rpm 1.6 MB/s | 89 kB 00:00 (42/178): hwloc-libs-2.0.4-3.fc32.aarch64.rpm 29 MB/s | 2.0 MB 00:00 (43/178): infiniband-diags-28.0-1.fc33.aarch64. 4.4 MB/s | 319 kB 00:00 (44/178): iptables-libs-1.8.4-7.fc33.aarch64.rp 8.6 MB/s | 371 kB 00:00 (45/178): isl-0.16.1-10.fc32.aarch64.rpm 11 MB/s | 831 kB 00:00 (46/178): json-c-0.13.1-9.fc32.aarch64.rpm 495 kB/s | 37 kB 00:00 (47/178): jsoncpp-1.9.2-2.fc33.aarch64.rpm 1.5 MB/s | 92 kB 00:00 (48/178): kbd-2.2.0-1.fc32.aarch64.rpm 5.0 MB/s | 376 kB 00:00 (49/178): kbd-legacy-2.2.0-1.fc32.noarch.rpm 6.5 MB/s | 473 kB 00:00 (50/178): kbd-misc-2.2.0-1.fc32.noarch.rpm 14 MB/s | 1.5 MB 00:00 (51/178): kmod-27-1.fc33.aarch64.rpm 2.8 MB/s | 123 kB 00:00 (52/178): kmod-libs-27-1.fc33.aarch64.rpm 4.6 MB/s | 63 kB 00:00 (53/178): kernel-headers-5.6.0-0.rc4.git0.1.fc3 16 MB/s | 1.1 MB 00:00 (54/178): libX11-common-1.6.9-3.fc32.noarch.rpm 3.1 MB/s | 153 kB 00:00 (55/178): libX11-1.6.9-3.fc32.aarch64.rpm 8.8 MB/s | 653 kB 00:00 (56/178): libX11-xcb-1.6.9-3.fc32.aarch64.rpm 630 kB/s | 11 kB 00:00 (57/178): libX11-devel-1.6.9-3.fc32.aarch64.rpm 13 MB/s | 938 kB 00:00 (58/178): libXau-devel-1.0.9-3.fc32.aarch64.rpm 516 kB/s | 14 kB 00:00 (59/178): libXau-1.0.9-3.fc32.aarch64.rpm 895 kB/s | 31 kB 00:00 (60/178): libargon2-20171227-4.fc32.aarch64.rpm 901 kB/s | 30 kB 00:00 (61/178): libcbor-0.5.0-7.fc33.aarch64.rpm 1.8 MB/s | 45 kB 00:00 (62/178): libasan-10.0.1-0.8.fc33.aarch64.rpm 8.1 MB/s | 397 kB 00:00 (63/178): libatomic-10.0.1-0.8.fc33.aarch64.rpm 345 kB/s | 24 kB 00:00 (64/178): libedit-3.1-32.20191231cvs.fc32.aarch 2.4 MB/s | 105 kB 00:00 (65/178): libevent-2.1.8-8.fc32.aarch64.rpm 2.8 MB/s | 242 kB 00:00 (66/178): libfido2-1.3.1-1.fc33.aarch64.rpm 964 kB/s | 63 kB 00:00 (67/178): libgfortran-10.0.1-0.8.fc33.aarch64.r 10 MB/s | 408 kB 00:00 (68/178): libfabric-1.9.1rc1-1.fc33.aarch64.rpm 4.3 MB/s | 495 kB 00:00 (69/178): libibumad-28.0-1.fc33.aarch64.rpm 368 kB/s | 25 kB 00:00 (70/178): libkcapi-1.1.5-2.fc32.aarch64.rpm 1.0 MB/s | 45 kB 00:00 (71/178): libkcapi-hmaccalc-1.1.5-2.fc32.aarch6 1.1 MB/s | 27 kB 00:00 (72/178): libmnl-1.0.4-11.fc32.aarch64.rpm 1.4 MB/s | 28 kB 00:00 (73/178): libibverbs-28.0-1.fc33.aarch64.rpm 3.2 MB/s | 310 kB 00:00 (74/178): libmpc-1.1.0-8.fc32.aarch64.rpm 1.7 MB/s | 60 kB 00:00 (75/178): libnfnetlink-1.0.1-17.fc32.aarch64.rp 1.7 MB/s | 29 kB 00:00 (76/178): libnetfilter_conntrack-1.0.7-4.fc32.a 1.6 MB/s | 61 kB 00:00 (77/178): libnl3-3.5.0-2.fc32.aarch64.rpm 7.2 MB/s | 318 kB 00:00 (78/178): librdmacm-28.0-1.fc33.aarch64.rpm 1.3 MB/s | 70 kB 00:00 (79/178): libpcap-1.9.1-3.fc33.aarch64.rpm 2.5 MB/s | 167 kB 00:00 (80/178): libubsan-10.0.1-0.8.fc33.aarch64.rpm 7.0 MB/s | 167 kB 00:00 (81/178): libseccomp-2.4.2-3.fc32.aarch64.rpm 1.5 MB/s | 78 kB 00:00 (82/178): libuv-1.34.2-1.fc32.aarch64.rpm 5.6 MB/s | 142 kB 00:00 (83/178): libstdc++-devel-10.0.1-0.8.fc33.aarch 26 MB/s | 2.0 MB 00:00 (84/178): libxcb-1.13.1-4.fc32.aarch64.rpm 4.7 MB/s | 230 kB 00:00 (85/178): libxcrypt-devel-4.4.15-1.fc33.aarch64 669 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numactl-libs-2.0.12-4.fc32.aarch64.r 340 kB/s | 30 kB 00:00 (101/178): ocl-icd-devel-2.2.12-9.fc32.aarch64. 545 kB/s | 16 kB 00:00 (102/178): openblas-0.3.9-1.fc33.aarch64.rpm 1.3 MB/s | 30 kB 00:00 (103/178): ocl-icd-2.2.12-9.fc32.aarch64.rpm 396 kB/s | 46 kB 00:00 (104/178): openblas-devel-0.3.9-1.fc33.aarch64. 1.9 MB/s | 72 kB 00:00 (105/178): openblas-openmp-0.3.9-1.fc33.aarch64 27 MB/s | 3.1 MB 00:00 (106/178): openblas-openmp64_-0.3.9-1.fc33.aarc 21 MB/s | 3.0 MB 00:00 (107/178): openblas-openmp64-0.3.9-1.fc33.aarch 16 MB/s | 3.0 MB 00:00 (108/178): openblas-serial-0.3.9-1.fc33.aarch64 23 MB/s | 3.0 MB 00:00 (109/178): openblas-serial64-0.3.9-1.fc33.aarch 25 MB/s | 2.9 MB 00:00 (110/178): openblas-serial64_-0.3.9-1.fc33.aarc 28 MB/s | 2.9 MB 00:00 (111/178): openblas-threads-0.3.9-1.fc33.aarch6 25 MB/s | 3.1 MB 00:00 (112/178): openblas-threads64-0.3.9-1.fc33.aarc 24 MB/s | 3.0 MB 00:00 (113/178): opencl-headers-2.2-6.20190205git49f0 1.6 MB/s | 79 kB 00:00 (114/178): openblas-threads64_-0.3.9-1.fc33.aar 22 MB/s | 3.0 MB 00:00 (115/178): opensm-libs-3.3.22-3.fc32.aarch64.rp 925 kB/s | 72 kB 00:00 (116/178): openmpi-devel-4.0.3rc4-1.fc33.aarch6 11 MB/s | 1.2 MB 00:00 (117/178): openmpi-4.0.3rc4-1.fc33.aarch64.rpm 19 MB/s | 2.6 MB 00:00 (118/178): openssh-8.2p1-2.fc33.aarch64.rpm 9.0 MB/s | 475 kB 00:00 (119/178): openssh-clients-8.2p1-2.fc33.aarch64 12 MB/s | 650 kB 00:00 (120/178): orangefs-2.9.7-6.fc31.aarch64.rpm 28 MB/s | 1.8 MB 00:00 (121/178): pciutils-3.6.4-1.fc33.aarch64.rpm 895 kB/s | 89 kB 00:00 (122/178): pciutils-libs-3.6.4-1.fc33.aarch64.r 433 kB/s | 40 kB 00:00 (123/178): perl-Carp-1.50-440.fc32.noarch.rpm 304 kB/s | 29 kB 00:00 (124/178): perl-Data-Dumper-2.174-443.fc32.aarc 904 kB/s | 55 kB 00:00 (125/178): perl-Errno-1.30-450.fc32.aarch64.rpm 509 kB/s | 24 kB 00:00 (126/178): perl-Exporter-5.74-2.fc32.noarch.rpm 527 kB/s | 32 kB 00:00 (127/178): perl-Encode-3.03-442.fc33.aarch64.rp 14 MB/s | 1.7 MB 00:00 (128/178): perl-File-Path-2.16-440.fc32.noarch. 564 kB/s | 36 kB 00:00 (129/178): perl-File-Temp-0.230.900-440.fc32.no 1.0 MB/s | 60 kB 00:00 (130/178): perl-Getopt-Long-2.51-2.fc32.noarch. 1.1 MB/s | 61 kB 00:00 (131/178): perl-HTTP-Tiny-0.076-440.fc32.noarch 1.4 MB/s | 55 kB 00:00 (132/178): perl-IO-1.40-450.fc32.aarch64.rpm 2.0 MB/s | 90 kB 00:00 (133/178): perl-PathTools-3.78-441.fc32.aarch64 2.0 MB/s | 86 kB 00:00 (134/178): perl-MIME-Base64-3.15-440.fc32.aarch 569 kB/s | 30 kB 00:00 (135/178): perl-Pod-Escapes-1.07-440.fc32.noarc 817 kB/s | 20 kB 00:00 (136/178): perl-Pod-Perldoc-3.28.01-444.fc33.no 3.8 MB/s | 85 kB 00:00 (137/178): perl-Pod-Simple-3.40-2.fc32.noarch.r 5.5 MB/s | 215 kB 00:00 (138/178): perl-Pod-Usage-1.69-440.fc32.noarch. 1.2 MB/s | 32 kB 00:00 (139/178): perl-Scalar-List-Utils-1.54-440.fc32 1.4 MB/s | 67 kB 00:00 (140/178): perl-Socket-2.029-5.fc32.aarch64.rpm 1.5 MB/s | 55 kB 00:00 (141/178): perl-Storable-3.15-443.fc32.aarch64. 2.2 MB/s | 95 kB 00:00 (142/178): perl-Term-ANSIColor-5.01-2.fc32.noar 1.4 MB/s | 49 kB 00:00 (143/178): perl-Term-Cap-1.17-440.fc32.noarch.r 828 kB/s | 22 kB 00:00 (144/178): perl-Text-Tabs+Wrap-2013.0523-440.fc 1.1 MB/s | 23 kB 00:00 (145/178): perl-Text-ParseWords-3.30-440.fc32.n 426 kB/s | 16 kB 00:00 (146/178): perl-Thread-Queue-3.13-440.fc32.noar 892 kB/s | 21 kB 00:00 (147/178): perl-Time-Local-1.300-2.fc32.noarch. 648 kB/s | 34 kB 00:00 (148/178): perl-Unicode-Normalize-1.26-440.fc32 186 kB/s | 93 kB 00:00 (149/178): perl-constant-1.33-441.fc32.noarch.r 35 kB/s | 23 kB 00:00 (150/178): perl-macros-5.30.1-450.fc32.aarch64. 319 kB/s | 20 kB 00:00 (151/178): perl-parent-0.238-1.fc32.noarch.rpm 130 kB/s | 14 kB 00:00 (152/178): perl-podlators-4.14-2.fc32.noarch.rp 4.9 MB/s | 113 kB 00:00 (153/178): perl-libs-5.30.1-450.fc32.aarch64.rp 4.2 MB/s | 1.7 MB 00:00 (154/178): perl-threads-2.22-442.fc32.aarch64.r 1.9 MB/s | 57 kB 00:00 (155/178): perl-threads-shared-1.60-441.fc32.aa 2.6 MB/s | 44 kB 00:00 (156/178): perl-interpreter-5.30.1-450.fc32.aar 6.5 MB/s | 6.0 MB 00:00 (157/178): procps-ng-3.3.15-7.fc32.aarch64.rpm 4.4 MB/s | 331 kB 00:00 (158/178): pmix-3.1.5-1.fc33.aarch64.rpm 5.3 MB/s | 505 kB 00:00 (159/178): python3-3.8.2-2.fc33.aarch64.rpm 1.4 MB/s | 30 kB 00:00 (160/178): python-pip-wheel-19.3.1-2.fc32.noarc 19 MB/s | 1.2 MB 00:00 (161/178): python-setuptools-wheel-45.2.0-1.fc3 4.7 MB/s | 294 kB 00:00 (162/178): qrencode-libs-4.0.2-5.fc32.aarch64.r 827 kB/s | 60 kB 00:00 (163/178): rdma-core-28.0-1.fc33.aarch64.rpm 605 kB/s | 59 kB 00:00 (164/178): python3-libs-3.8.2-2.fc33.aarch64.rp 42 MB/s | 7.4 MB 00:00 (165/178): rdma-core-devel-28.0-1.fc33.aarch64. 3.9 MB/s | 299 kB 00:00 (166/178): rhash-1.3.8-3.fc32.aarch64.rpm 3.0 MB/s | 180 kB 00:00 (167/178): rpm-mpi-hooks-6-5.fc32.noarch.rpm 356 kB/s | 11 kB 00:00 (168/178): sqlite-libs-3.31.1-1.fc32.aarch64.rp 5.6 MB/s | 611 kB 00:00 (169/178): systemd-rpm-macros-245~rc2-1.fc33.no 412 kB/s | 26 kB 00:00 (170/178): systemd-pam-245~rc2-1.fc33.aarch64.r 1.6 MB/s | 286 kB 00:00 (171/178): systemd-245~rc2-1.fc33.aarch64.rpm 18 MB/s | 3.9 MB 00:00 (172/178): systemd-udev-245~rc2-1.fc33.aarch64. 18 MB/s | 1.4 MB 00:00 (173/178): tcl-8.6.10-1.fc32.aarch64.rpm 10 MB/s | 1.1 MB 00:00 (174/178): tcsh-6.22.02-3.fc32.aarch64.rpm 4.3 MB/s | 448 kB 00:00 (175/178): tng-1.8.2-6.fc32.aarch64.rpm 1.5 MB/s | 133 kB 00:00 (176/178): tng-devel-1.8.2-6.fc32.aarch64.rpm 775 kB/s | 30 kB 00:00 (177/178): ucx-1.6.1-2.fc32.aarch64.rpm 4.1 MB/s | 371 kB 00:00 (178/178): xorg-x11-proto-devel-2019.1-3.fc32.n 2.5 MB/s | 262 kB 00:00 -------------------------------------------------------------------------------- Total 25 MB/s | 159 MB 00:06 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : perl-Exporter-5.74-2.fc32.noarch 1/178 Installing : perl-libs-4:5.30.1-450.fc32.aarch64 2/178 Installing : perl-Carp-1.50-440.fc32.noarch 3/178 Installing : libgfortran-10.0.1-0.8.fc33.aarch64 4/178 Installing : openblas-0.3.9-1.fc33.aarch64 5/178 Installing : perl-Scalar-List-Utils-3:1.54-440.fc32.aarch64 6/178 Installing : hwloc-libs-2.0.4-3.fc32.aarch64 7/178 Installing : perl-parent-1:0.238-1.fc32.noarch 8/178 Installing : libnl3-3.5.0-2.fc32.aarch64 9/178 Installing : libmpc-1.1.0-8.fc32.aarch64 10/178 Installing : kmod-libs-27-1.fc33.aarch64 11/178 Installing : perl-Text-ParseWords-3.30-440.fc32.noarch 12/178 Installing : libevent-2.1.8-8.fc32.aarch64 13/178 Installing : kmod-27-1.fc33.aarch64 14/178 Installing : fftw-libs-single-3.3.8-7.fc32.aarch64 15/178 Installing : fftw-libs-long-3.3.8-7.fc32.aarch64 16/178 Installing : fftw-libs-double-3.3.8-7.fc32.aarch64 17/178 Installing : cmake-filesystem-3.17.0-0.3.rc2.fc33.aarch64 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Installing : json-c-0.13.1-9.fc32.aarch64 123/178 Installing : isl-0.16.1-10.fc32.aarch64 124/178 Installing : gcc-10.0.1-0.8.fc33.aarch64 125/178 Installing : gcc-gfortran-10.0.1-0.8.fc33.aarch64 126/178 Installing : hwdata-0.333-1.fc33.noarch 127/178 Installing : pciutils-3.6.4-1.fc33.aarch64 128/178 Installing : gsl-2.6-2.fc32.aarch64 129/178 Running scriptlet: groff-base-1.22.3-24.fc33.aarch64 130/178 Installing : groff-base-1.22.3-24.fc33.aarch64 130/178 Running scriptlet: groff-base-1.22.3-24.fc33.aarch64 130/178 Installing : perl-Encode-4:3.03-442.fc33.aarch64 131/178 Installing : perl-Pod-Perldoc-3.28.01-444.fc33.noarch 132/178 Installing : perl-Pod-Simple-1:3.40-2.fc32.noarch 133/178 Installing : perl-Getopt-Long-1:2.51-2.fc32.noarch 134/178 Installing : perl-Pod-Usage-4:1.69-440.fc32.noarch 135/178 Installing : perl-podlators-1:4.14-2.fc32.noarch 136/178 Installing : autoconf-2.69-32.fc32.noarch 137/178 Installing : automake-1.16.1-14.fc32.noarch 138/178 Installing : acl-2.2.53-5.fc32.aarch64 139/178 Installing : device-mapper-1.02.167-2.fc32.aarch64 140/178 Installing : device-mapper-libs-1.02.167-2.fc32.aarch64 141/178 Installing : cryptsetup-libs-2.3.0-1.fc32.aarch64 142/178 Installing : dbus-1:1.12.16-5.fc33.aarch64 143/178 Installing : systemd-pam-245~rc2-1.fc33.aarch64 144/178 Running scriptlet: systemd-245~rc2-1.fc33.aarch64 145/178 Installing : systemd-245~rc2-1.fc33.aarch64 145/178 Running scriptlet: systemd-245~rc2-1.fc33.aarch64 145/178 Installing : dbus-common-1:1.12.16-5.fc33.noarch 146/178 Running scriptlet: dbus-common-1:1.12.16-5.fc33.noarch 146/178 Created symlink /etc/systemd/system/sockets.target.wants/dbus.socket → /usr/lib/systemd/system/dbus.socket. Created symlink /etc/systemd/user/sockets.target.wants/dbus.socket → /usr/lib/systemd/user/dbus.socket. Running scriptlet: dbus-broker-22-1.fc33.aarch64 147/178 Installing : dbus-broker-22-1.fc33.aarch64 147/178 Running scriptlet: dbus-broker-22-1.fc33.aarch64 147/178 Failed to get unit file state for dbus-daemon.service: No such file or directory Failed to get unit file state for dbus-daemon.service: No such file or directory Failed to disable unit, unit dbus-daemon.service does not exist. Failed to disable unit, unit dbus-daemon.service does not exist. Installing : libfido2-1.3.1-1.fc33.aarch64 148/178 Installing : openssh-clients-8.2p1-2.fc33.aarch64 149/178 Installing : libkcapi-1.1.5-2.fc32.aarch64 150/178 Installing : libkcapi-hmaccalc-1.1.5-2.fc32.aarch64 151/178 Running scriptlet: systemd-udev-245~rc2-1.fc33.aarch64 152/178 Installing : systemd-udev-245~rc2-1.fc33.aarch64 152/178 Running scriptlet: systemd-udev-245~rc2-1.fc33.aarch64 152/178 Installing : dracut-050-1.fc33.aarch64 153/178 Installing : rdma-core-28.0-1.fc33.aarch64 154/178 Running scriptlet: rdma-core-28.0-1.fc33.aarch64 154/178 Running in chroot, ignoring request. Running in chroot, ignoring request. Running in chroot, ignoring request. Installing : libibverbs-28.0-1.fc33.aarch64 155/178 Installing : libibumad-28.0-1.fc33.aarch64 156/178 Installing : librdmacm-28.0-1.fc33.aarch64 157/178 Installing : libfabric-1.9.1rc1-1.fc33.aarch64 158/178 Installing : ibacm-28.0-1.fc33.aarch64 159/178 Running scriptlet: ibacm-28.0-1.fc33.aarch64 159/178 Installing : infiniband-diags-28.0-1.fc33.aarch64 160/178 Installing : rdma-core-devel-28.0-1.fc33.aarch64 161/178 Installing : opensm-libs-3.3.22-3.fc32.aarch64 162/178 Installing : orangefs-2.9.7-6.fc31.aarch64 163/178 Installing : openmpi-4.0.3rc4-1.fc33.aarch64 164/178 Installing : openmpi-devel-4.0.3rc4-1.fc33.aarch64 165/178 Installing : hwloc-devel-2.0.4-3.fc32.aarch64 166/178 Installing : gsl-devel-2.6-2.fc32.aarch64 167/178 Installing : mpich-devel-3.3.2-4.fc33.aarch64 168/178 Installing : annobin-9.12-1.fc33.aarch64 169/178 Installing : gcc-c++-10.0.1-0.8.fc33.aarch64 170/178 Installing : libX11-devel-1.6.9-3.fc32.aarch64 171/178 Installing : lmfit-devel-8.2.2-2.fc32.aarch64 172/178 Installing : ocl-icd-devel-2.2.12-9.fc32.aarch64 173/178 Installing : tng-devel-1.8.2-6.fc32.aarch64 174/178 Installing : openblas-devel-0.3.9-1.fc33.aarch64 175/178 Installing : fftw-devel-3.3.8-7.fc32.aarch64 176/178 Installing : hwloc-2.0.4-3.fc32.aarch64 177/178 Installing : bash-completion-1:2.8-8.fc32.noarch 178/178 Running scriptlet: bash-completion-1:2.8-8.fc32.noarch 178/178 Verifying : Lmod-8.3.1-2.fc33.aarch64 1/178 Verifying : acl-2.2.53-5.fc32.aarch64 2/178 Verifying : annobin-9.12-1.fc33.aarch64 3/178 Verifying : autoconf-2.69-32.fc32.noarch 4/178 Verifying : automake-1.16.1-14.fc32.noarch 5/178 Verifying : bash-completion-1:2.8-8.fc32.noarch 6/178 Verifying : cmake-3.17.0-0.3.rc2.fc33.aarch64 7/178 Verifying : cmake-data-3.17.0-0.3.rc2.fc33.noarch 8/178 Verifying : cmake-filesystem-3.17.0-0.3.rc2.fc33.aarch64 9/178 Verifying : cmake-rpm-macros-3.17.0-0.3.rc2.fc33.noarch 10/178 Verifying : cpp-10.0.1-0.8.fc33.aarch64 11/178 Verifying : cryptsetup-libs-2.3.0-1.fc32.aarch64 12/178 Verifying : dbus-1:1.12.16-5.fc33.aarch64 13/178 Verifying : dbus-broker-22-1.fc33.aarch64 14/178 Verifying : dbus-common-1:1.12.16-5.fc33.noarch 15/178 Verifying : device-mapper-1.02.167-2.fc32.aarch64 16/178 Verifying : device-mapper-libs-1.02.167-2.fc32.aarch64 17/178 Verifying : dracut-050-1.fc33.aarch64 18/178 Verifying : emacs-filesystem-1:26.3-2.fc32.noarch 19/178 Verifying : fftw-3.3.8-7.fc32.aarch64 20/178 Verifying : fftw-devel-3.3.8-7.fc32.aarch64 21/178 Verifying : fftw-libs-3.3.8-7.fc32.aarch64 22/178 Verifying : fftw-libs-double-3.3.8-7.fc32.aarch64 23/178 Verifying : fftw-libs-long-3.3.8-7.fc32.aarch64 24/178 Verifying : fftw-libs-single-3.3.8-7.fc32.aarch64 25/178 Verifying : fipscheck-1.5.0-8.fc32.aarch64 26/178 Verifying : fipscheck-lib-1.5.0-8.fc32.aarch64 27/178 Verifying : gcc-10.0.1-0.8.fc33.aarch64 28/178 Verifying : gcc-c++-10.0.1-0.8.fc33.aarch64 29/178 Verifying : gcc-gfortran-10.0.1-0.8.fc33.aarch64 30/178 Verifying : gdbm-libs-1:1.18.1-3.fc32.aarch64 31/178 Verifying : glibc-devel-2.31.9000-1.fc33.aarch64 32/178 Verifying : glibc-headers-2.31.9000-1.fc33.aarch64 33/178 Verifying : gnutls-3.6.12-1.fc32.aarch64 34/178 Verifying : groff-base-1.22.3-24.fc33.aarch64 35/178 Verifying : gsl-2.6-2.fc32.aarch64 36/178 Verifying : gsl-devel-2.6-2.fc32.aarch64 37/178 Verifying : hwdata-0.333-1.fc33.noarch 38/178 Verifying : hwloc-2.0.4-3.fc32.aarch64 39/178 Verifying : hwloc-devel-2.0.4-3.fc32.aarch64 40/178 Verifying : hwloc-libs-2.0.4-3.fc32.aarch64 41/178 Verifying : ibacm-28.0-1.fc33.aarch64 42/178 Verifying : infiniband-diags-28.0-1.fc33.aarch64 43/178 Verifying : iptables-libs-1.8.4-7.fc33.aarch64 44/178 Verifying : isl-0.16.1-10.fc32.aarch64 45/178 Verifying : json-c-0.13.1-9.fc32.aarch64 46/178 Verifying : jsoncpp-1.9.2-2.fc33.aarch64 47/178 Verifying : kbd-2.2.0-1.fc32.aarch64 48/178 Verifying : kbd-legacy-2.2.0-1.fc32.noarch 49/178 Verifying : kbd-misc-2.2.0-1.fc32.noarch 50/178 Verifying : kernel-headers-5.6.0-0.rc4.git0.1.fc33.aarch64 51/178 Verifying : kmod-27-1.fc33.aarch64 52/178 Verifying : kmod-libs-27-1.fc33.aarch64 53/178 Verifying : libX11-1.6.9-3.fc32.aarch64 54/178 Verifying : libX11-common-1.6.9-3.fc32.noarch 55/178 Verifying : libX11-devel-1.6.9-3.fc32.aarch64 56/178 Verifying : libX11-xcb-1.6.9-3.fc32.aarch64 57/178 Verifying : libXau-1.0.9-3.fc32.aarch64 58/178 Verifying : libXau-devel-1.0.9-3.fc32.aarch64 59/178 Verifying : libargon2-20171227-4.fc32.aarch64 60/178 Verifying : libasan-10.0.1-0.8.fc33.aarch64 61/178 Verifying : libatomic-10.0.1-0.8.fc33.aarch64 62/178 Verifying : libcbor-0.5.0-7.fc33.aarch64 63/178 Verifying : libedit-3.1-32.20191231cvs.fc32.aarch64 64/178 Verifying : libevent-2.1.8-8.fc32.aarch64 65/178 Verifying : libfabric-1.9.1rc1-1.fc33.aarch64 66/178 Verifying : libfido2-1.3.1-1.fc33.aarch64 67/178 Verifying : libgfortran-10.0.1-0.8.fc33.aarch64 68/178 Verifying : libibumad-28.0-1.fc33.aarch64 69/178 Verifying : libibverbs-28.0-1.fc33.aarch64 70/178 Verifying : libkcapi-1.1.5-2.fc32.aarch64 71/178 Verifying : libkcapi-hmaccalc-1.1.5-2.fc32.aarch64 72/178 Verifying : libmnl-1.0.4-11.fc32.aarch64 73/178 Verifying : libmpc-1.1.0-8.fc32.aarch64 74/178 Verifying : libnetfilter_conntrack-1.0.7-4.fc32.aarch64 75/178 Verifying : libnfnetlink-1.0.1-17.fc32.aarch64 76/178 Verifying : libnl3-3.5.0-2.fc32.aarch64 77/178 Verifying : libpcap-14:1.9.1-3.fc33.aarch64 78/178 Verifying : librdmacm-28.0-1.fc33.aarch64 79/178 Verifying : libseccomp-2.4.2-3.fc32.aarch64 80/178 Verifying : libstdc++-devel-10.0.1-0.8.fc33.aarch64 81/178 Verifying : libubsan-10.0.1-0.8.fc33.aarch64 82/178 Verifying : libuv-1:1.34.2-1.fc32.aarch64 83/178 Verifying : libxcb-1.13.1-4.fc32.aarch64 84/178 Verifying : libxcb-devel-1.13.1-4.fc32.aarch64 85/178 Verifying : libxcrypt-devel-4.4.15-1.fc33.aarch64 86/178 Verifying : lmfit-8.2.2-2.fc32.aarch64 87/178 Verifying : lmfit-devel-8.2.2-2.fc32.aarch64 88/178 Verifying : lua-5.3.5-7.fc32.aarch64 89/178 Verifying : lua-filesystem-1.6.3-12.fc32.aarch64 90/178 Verifying : lua-json-1.3.2-14.fc32.noarch 91/178 Verifying : lua-lpeg-1.0.2-2.fc32.aarch64 92/178 Verifying : lua-posix-33.3.1-16.fc32.aarch64 93/178 Verifying : lua-term-0.07-10.fc32.aarch64 94/178 Verifying : m4-1.4.18-12.fc32.aarch64 95/178 Verifying : mpich-3.3.2-4.fc33.aarch64 96/178 Verifying : mpich-devel-3.3.2-4.fc33.aarch64 97/178 Verifying : munge-libs-0.5.13-7.fc32.aarch64 98/178 Verifying : nettle-3.5.1-5.fc32.aarch64 99/178 Verifying : numactl-libs-2.0.12-4.fc32.aarch64 100/178 Verifying : ocl-icd-2.2.12-9.fc32.aarch64 101/178 Verifying : ocl-icd-devel-2.2.12-9.fc32.aarch64 102/178 Verifying : openblas-0.3.9-1.fc33.aarch64 103/178 Verifying : openblas-devel-0.3.9-1.fc33.aarch64 104/178 Verifying : openblas-openmp-0.3.9-1.fc33.aarch64 105/178 Verifying : openblas-openmp64-0.3.9-1.fc33.aarch64 106/178 Verifying : openblas-openmp64_-0.3.9-1.fc33.aarch64 107/178 Verifying : openblas-serial-0.3.9-1.fc33.aarch64 108/178 Verifying : openblas-serial64-0.3.9-1.fc33.aarch64 109/178 Verifying : openblas-serial64_-0.3.9-1.fc33.aarch64 110/178 Verifying : openblas-threads-0.3.9-1.fc33.aarch64 111/178 Verifying : openblas-threads64-0.3.9-1.fc33.aarch64 112/178 Verifying : openblas-threads64_-0.3.9-1.fc33.aarch64 113/178 Verifying : opencl-headers-2.2-6.20190205git49f07d3.fc32.noa 114/178 Verifying : openmpi-4.0.3rc4-1.fc33.aarch64 115/178 Verifying : openmpi-devel-4.0.3rc4-1.fc33.aarch64 116/178 Verifying : opensm-libs-3.3.22-3.fc32.aarch64 117/178 Verifying : openssh-8.2p1-2.fc33.aarch64 118/178 Verifying : openssh-clients-8.2p1-2.fc33.aarch64 119/178 Verifying : orangefs-2.9.7-6.fc31.aarch64 120/178 Verifying : pciutils-3.6.4-1.fc33.aarch64 121/178 Verifying : pciutils-libs-3.6.4-1.fc33.aarch64 122/178 Verifying : perl-Carp-1.50-440.fc32.noarch 123/178 Verifying : perl-Data-Dumper-2.174-443.fc32.aarch64 124/178 Verifying : perl-Encode-4:3.03-442.fc33.aarch64 125/178 Verifying : perl-Errno-1.30-450.fc32.aarch64 126/178 Verifying : perl-Exporter-5.74-2.fc32.noarch 127/178 Verifying : perl-File-Path-2.16-440.fc32.noarch 128/178 Verifying : perl-File-Temp-1:0.230.900-440.fc32.noarch 129/178 Verifying : perl-Getopt-Long-1:2.51-2.fc32.noarch 130/178 Verifying : perl-HTTP-Tiny-0.076-440.fc32.noarch 131/178 Verifying : perl-IO-1.40-450.fc32.aarch64 132/178 Verifying : perl-MIME-Base64-3.15-440.fc32.aarch64 133/178 Verifying : perl-PathTools-3.78-441.fc32.aarch64 134/178 Verifying : perl-Pod-Escapes-1:1.07-440.fc32.noarch 135/178 Verifying : perl-Pod-Perldoc-3.28.01-444.fc33.noarch 136/178 Verifying : perl-Pod-Simple-1:3.40-2.fc32.noarch 137/178 Verifying : perl-Pod-Usage-4:1.69-440.fc32.noarch 138/178 Verifying : perl-Scalar-List-Utils-3:1.54-440.fc32.aarch64 139/178 Verifying : perl-Socket-4:2.029-5.fc32.aarch64 140/178 Verifying : perl-Storable-1:3.15-443.fc32.aarch64 141/178 Verifying : perl-Term-ANSIColor-5.01-2.fc32.noarch 142/178 Verifying : perl-Term-Cap-1.17-440.fc32.noarch 143/178 Verifying : perl-Text-ParseWords-3.30-440.fc32.noarch 144/178 Verifying : perl-Text-Tabs+Wrap-2013.0523-440.fc32.noarch 145/178 Verifying : perl-Thread-Queue-3.13-440.fc32.noarch 146/178 Verifying : perl-Time-Local-2:1.300-2.fc32.noarch 147/178 Verifying : perl-Unicode-Normalize-1.26-440.fc32.aarch64 148/178 Verifying : perl-constant-1.33-441.fc32.noarch 149/178 Verifying : perl-interpreter-4:5.30.1-450.fc32.aarch64 150/178 Verifying : perl-libs-4:5.30.1-450.fc32.aarch64 151/178 Verifying : perl-macros-4:5.30.1-450.fc32.aarch64 152/178 Verifying : perl-parent-1:0.238-1.fc32.noarch 153/178 Verifying : perl-podlators-1:4.14-2.fc32.noarch 154/178 Verifying : perl-threads-1:2.22-442.fc32.aarch64 155/178 Verifying : perl-threads-shared-1.60-441.fc32.aarch64 156/178 Verifying : pmix-3.1.5-1.fc33.aarch64 157/178 Verifying : procps-ng-3.3.15-7.fc32.aarch64 158/178 Verifying : python-pip-wheel-19.3.1-2.fc32.noarch 159/178 Verifying : python-setuptools-wheel-45.2.0-1.fc33.noarch 160/178 Verifying : python3-3.8.2-2.fc33.aarch64 161/178 Verifying : python3-libs-3.8.2-2.fc33.aarch64 162/178 Verifying : qrencode-libs-4.0.2-5.fc32.aarch64 163/178 Verifying : rdma-core-28.0-1.fc33.aarch64 164/178 Verifying : rdma-core-devel-28.0-1.fc33.aarch64 165/178 Verifying : rhash-1.3.8-3.fc32.aarch64 166/178 Verifying : rpm-mpi-hooks-6-5.fc32.noarch 167/178 Verifying : sqlite-libs-3.31.1-1.fc32.aarch64 168/178 Verifying : systemd-245~rc2-1.fc33.aarch64 169/178 Verifying : systemd-pam-245~rc2-1.fc33.aarch64 170/178 Verifying : systemd-rpm-macros-245~rc2-1.fc33.noarch 171/178 Verifying : systemd-udev-245~rc2-1.fc33.aarch64 172/178 Verifying : tcl-1:8.6.10-1.fc32.aarch64 173/178 Verifying : tcsh-6.22.02-3.fc32.aarch64 174/178 Verifying : tng-1.8.2-6.fc32.aarch64 175/178 Verifying : tng-devel-1.8.2-6.fc32.aarch64 176/178 Verifying : ucx-1.6.1-2.fc32.aarch64 177/178 Verifying : xorg-x11-proto-devel-2019.1-3.fc32.noarch 178/178 Installed: Lmod-8.3.1-2.fc33.aarch64 acl-2.2.53-5.fc32.aarch64 annobin-9.12-1.fc33.aarch64 autoconf-2.69-32.fc32.noarch automake-1.16.1-14.fc32.noarch bash-completion-1:2.8-8.fc32.noarch cmake-3.17.0-0.3.rc2.fc33.aarch64 cmake-data-3.17.0-0.3.rc2.fc33.noarch cmake-filesystem-3.17.0-0.3.rc2.fc33.aarch64 cmake-rpm-macros-3.17.0-0.3.rc2.fc33.noarch cpp-10.0.1-0.8.fc33.aarch64 cryptsetup-libs-2.3.0-1.fc32.aarch64 dbus-1:1.12.16-5.fc33.aarch64 dbus-broker-22-1.fc33.aarch64 dbus-common-1:1.12.16-5.fc33.noarch device-mapper-1.02.167-2.fc32.aarch64 device-mapper-libs-1.02.167-2.fc32.aarch64 dracut-050-1.fc33.aarch64 emacs-filesystem-1:26.3-2.fc32.noarch fftw-3.3.8-7.fc32.aarch64 fftw-devel-3.3.8-7.fc32.aarch64 fftw-libs-3.3.8-7.fc32.aarch64 fftw-libs-double-3.3.8-7.fc32.aarch64 fftw-libs-long-3.3.8-7.fc32.aarch64 fftw-libs-single-3.3.8-7.fc32.aarch64 fipscheck-1.5.0-8.fc32.aarch64 fipscheck-lib-1.5.0-8.fc32.aarch64 gcc-10.0.1-0.8.fc33.aarch64 gcc-c++-10.0.1-0.8.fc33.aarch64 gcc-gfortran-10.0.1-0.8.fc33.aarch64 gdbm-libs-1:1.18.1-3.fc32.aarch64 glibc-devel-2.31.9000-1.fc33.aarch64 glibc-headers-2.31.9000-1.fc33.aarch64 gnutls-3.6.12-1.fc32.aarch64 groff-base-1.22.3-24.fc33.aarch64 gsl-2.6-2.fc32.aarch64 gsl-devel-2.6-2.fc32.aarch64 hwdata-0.333-1.fc33.noarch hwloc-2.0.4-3.fc32.aarch64 hwloc-devel-2.0.4-3.fc32.aarch64 hwloc-libs-2.0.4-3.fc32.aarch64 ibacm-28.0-1.fc33.aarch64 infiniband-diags-28.0-1.fc33.aarch64 iptables-libs-1.8.4-7.fc33.aarch64 isl-0.16.1-10.fc32.aarch64 json-c-0.13.1-9.fc32.aarch64 jsoncpp-1.9.2-2.fc33.aarch64 kbd-2.2.0-1.fc32.aarch64 kbd-legacy-2.2.0-1.fc32.noarch kbd-misc-2.2.0-1.fc32.noarch kernel-headers-5.6.0-0.rc4.git0.1.fc33.aarch64 kmod-27-1.fc33.aarch64 kmod-libs-27-1.fc33.aarch64 libX11-1.6.9-3.fc32.aarch64 libX11-common-1.6.9-3.fc32.noarch libX11-devel-1.6.9-3.fc32.aarch64 libX11-xcb-1.6.9-3.fc32.aarch64 libXau-1.0.9-3.fc32.aarch64 libXau-devel-1.0.9-3.fc32.aarch64 libargon2-20171227-4.fc32.aarch64 libasan-10.0.1-0.8.fc33.aarch64 libatomic-10.0.1-0.8.fc33.aarch64 libcbor-0.5.0-7.fc33.aarch64 libedit-3.1-32.20191231cvs.fc32.aarch64 libevent-2.1.8-8.fc32.aarch64 libfabric-1.9.1rc1-1.fc33.aarch64 libfido2-1.3.1-1.fc33.aarch64 libgfortran-10.0.1-0.8.fc33.aarch64 libibumad-28.0-1.fc33.aarch64 libibverbs-28.0-1.fc33.aarch64 libkcapi-1.1.5-2.fc32.aarch64 libkcapi-hmaccalc-1.1.5-2.fc32.aarch64 libmnl-1.0.4-11.fc32.aarch64 libmpc-1.1.0-8.fc32.aarch64 libnetfilter_conntrack-1.0.7-4.fc32.aarch64 libnfnetlink-1.0.1-17.fc32.aarch64 libnl3-3.5.0-2.fc32.aarch64 libpcap-14:1.9.1-3.fc33.aarch64 librdmacm-28.0-1.fc33.aarch64 libseccomp-2.4.2-3.fc32.aarch64 libstdc++-devel-10.0.1-0.8.fc33.aarch64 libubsan-10.0.1-0.8.fc33.aarch64 libuv-1:1.34.2-1.fc32.aarch64 libxcb-1.13.1-4.fc32.aarch64 libxcb-devel-1.13.1-4.fc32.aarch64 libxcrypt-devel-4.4.15-1.fc33.aarch64 lmfit-8.2.2-2.fc32.aarch64 lmfit-devel-8.2.2-2.fc32.aarch64 lua-5.3.5-7.fc32.aarch64 lua-filesystem-1.6.3-12.fc32.aarch64 lua-json-1.3.2-14.fc32.noarch lua-lpeg-1.0.2-2.fc32.aarch64 lua-posix-33.3.1-16.fc32.aarch64 lua-term-0.07-10.fc32.aarch64 m4-1.4.18-12.fc32.aarch64 mpich-3.3.2-4.fc33.aarch64 mpich-devel-3.3.2-4.fc33.aarch64 munge-libs-0.5.13-7.fc32.aarch64 nettle-3.5.1-5.fc32.aarch64 numactl-libs-2.0.12-4.fc32.aarch64 ocl-icd-2.2.12-9.fc32.aarch64 ocl-icd-devel-2.2.12-9.fc32.aarch64 openblas-0.3.9-1.fc33.aarch64 openblas-devel-0.3.9-1.fc33.aarch64 openblas-openmp-0.3.9-1.fc33.aarch64 openblas-openmp64-0.3.9-1.fc33.aarch64 openblas-openmp64_-0.3.9-1.fc33.aarch64 openblas-serial-0.3.9-1.fc33.aarch64 openblas-serial64-0.3.9-1.fc33.aarch64 openblas-serial64_-0.3.9-1.fc33.aarch64 openblas-threads-0.3.9-1.fc33.aarch64 openblas-threads64-0.3.9-1.fc33.aarch64 openblas-threads64_-0.3.9-1.fc33.aarch64 opencl-headers-2.2-6.20190205git49f07d3.fc32.noarch openmpi-4.0.3rc4-1.fc33.aarch64 openmpi-devel-4.0.3rc4-1.fc33.aarch64 opensm-libs-3.3.22-3.fc32.aarch64 openssh-8.2p1-2.fc33.aarch64 openssh-clients-8.2p1-2.fc33.aarch64 orangefs-2.9.7-6.fc31.aarch64 pciutils-3.6.4-1.fc33.aarch64 pciutils-libs-3.6.4-1.fc33.aarch64 perl-Carp-1.50-440.fc32.noarch perl-Data-Dumper-2.174-443.fc32.aarch64 perl-Encode-4:3.03-442.fc33.aarch64 perl-Errno-1.30-450.fc32.aarch64 perl-Exporter-5.74-2.fc32.noarch perl-File-Path-2.16-440.fc32.noarch perl-File-Temp-1:0.230.900-440.fc32.noarch perl-Getopt-Long-1:2.51-2.fc32.noarch perl-HTTP-Tiny-0.076-440.fc32.noarch perl-IO-1.40-450.fc32.aarch64 perl-MIME-Base64-3.15-440.fc32.aarch64 perl-PathTools-3.78-441.fc32.aarch64 perl-Pod-Escapes-1:1.07-440.fc32.noarch perl-Pod-Perldoc-3.28.01-444.fc33.noarch perl-Pod-Simple-1:3.40-2.fc32.noarch perl-Pod-Usage-4:1.69-440.fc32.noarch perl-Scalar-List-Utils-3:1.54-440.fc32.aarch64 perl-Socket-4:2.029-5.fc32.aarch64 perl-Storable-1:3.15-443.fc32.aarch64 perl-Term-ANSIColor-5.01-2.fc32.noarch perl-Term-Cap-1.17-440.fc32.noarch perl-Text-ParseWords-3.30-440.fc32.noarch perl-Text-Tabs+Wrap-2013.0523-440.fc32.noarch perl-Thread-Queue-3.13-440.fc32.noarch perl-Time-Local-2:1.300-2.fc32.noarch perl-Unicode-Normalize-1.26-440.fc32.aarch64 perl-constant-1.33-441.fc32.noarch perl-interpreter-4:5.30.1-450.fc32.aarch64 perl-libs-4:5.30.1-450.fc32.aarch64 perl-macros-4:5.30.1-450.fc32.aarch64 perl-parent-1:0.238-1.fc32.noarch perl-podlators-1:4.14-2.fc32.noarch perl-threads-1:2.22-442.fc32.aarch64 perl-threads-shared-1.60-441.fc32.aarch64 pmix-3.1.5-1.fc33.aarch64 procps-ng-3.3.15-7.fc32.aarch64 python-pip-wheel-19.3.1-2.fc32.noarch python-setuptools-wheel-45.2.0-1.fc33.noarch python3-3.8.2-2.fc33.aarch64 python3-libs-3.8.2-2.fc33.aarch64 qrencode-libs-4.0.2-5.fc32.aarch64 rdma-core-28.0-1.fc33.aarch64 rdma-core-devel-28.0-1.fc33.aarch64 rhash-1.3.8-3.fc32.aarch64 rpm-mpi-hooks-6-5.fc32.noarch sqlite-libs-3.31.1-1.fc32.aarch64 systemd-245~rc2-1.fc33.aarch64 systemd-pam-245~rc2-1.fc33.aarch64 systemd-rpm-macros-245~rc2-1.fc33.noarch systemd-udev-245~rc2-1.fc33.aarch64 tcl-1:8.6.10-1.fc32.aarch64 tcsh-6.22.02-3.fc32.aarch64 tng-1.8.2-6.fc32.aarch64 tng-devel-1.8.2-6.fc32.aarch64 ucx-1.6.1-2.fc32.aarch64 xorg-x11-proto-devel-2019.1-3.fc32.noarch Complete! Finish: build setup for gromacs-2020.1-1.fc33.src.rpm Start: rpmbuild gromacs-2020.1-1.fc33.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1583193600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mCuNFt + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2020.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/gromacs-2020.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2020.1 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/regressiontests-2020.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (gromacs-dssp-path.patch):' Patch #0 (gromacs-dssp-path.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/gmxana/gmx_do_dssp.cpp Hunk #1 succeeded at 473 (offset 28 lines). Hunk #2 succeeded at 607 (offset 17 lines). + install -Dpm644 /builddir/build/SOURCES/manual-2020.1.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit + sed -i 's/set(_timeout [0-9]*)/set(_timeout 900)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Vycz7w + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 49 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2020.1/serial ~/build/BUILD/gromacs-2020.1 + test -z '' + cp -al ../regressiontests-2020.1 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n '' ++ echo -DGMX_X11=ON ++ test '' = openmpi ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2020.1/serial/tests ++ test -n '' ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=ARM_NEON_ASIMD ' ' -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2020.1/serial/tests -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 3 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/posts/2018/fixing-imagick-error-unauthorized Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pygments' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/serial + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". 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Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". 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Scanning dependencies of target clFFT make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/action.transpose.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/accessors.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/enqueue.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend.internal". Scanning dependencies of target vmddlopen make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/fileio/CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/vmd_molfile/vmddlopen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target vmddlopen make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.copy.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/forceelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/view_objlib.dir/depend.internal". Scanning dependencies of target view_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/3dview.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/3dview.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/buttons.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/buttons.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/dialogs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/dialogs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/md5sum.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/lifetime.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/transform.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/plan.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp:59: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:36, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:37: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp:38: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.h:63, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:48, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp:67: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp:59: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp:41: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genrestr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void read_vsite_database(const char*, std::vector*, std::vector*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:274:24: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/insert_molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/grompp.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/grompp.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/coordinatefile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadaptercontainer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/outputselector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setforces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setprecision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setstarttime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/settimestep.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setvelocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/requirements.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src 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src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/report_methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/pme_error.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/pme_error.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tune_pme.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tune_pme.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:84: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.h:40, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.h:40, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp:60: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:75: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.h:47, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp:73: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits.h:54, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.h:47, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_3dfft_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_3dfft_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft.h:55, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.h:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils_ocl.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.cpp:42: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp:64: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp:58: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -ldl -lrt /usr/lib64/libfftw3f.so -lopenblas -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.5.0.0 ../../lib/libgromacs.so.5 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -std=c++14 -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/mdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/mdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2020.1/serial/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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[100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/status.cpp.o -c 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/mdsignals.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/mdsignals.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include 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-DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/session.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/session.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/session.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Linking CXX shared library ../../../lib/libgmxapi.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmxapi.so.0 -o ../../../lib/libgmxapi.so.0.1.0 CMakeFiles/gmxapi.dir/context.cpp.o CMakeFiles/gmxapi.dir/exceptions.cpp.o CMakeFiles/gmxapi.dir/gmxapi.cpp.o CMakeFiles/gmxapi.dir/md.cpp.o CMakeFiles/gmxapi.dir/mdmodule.cpp.o CMakeFiles/gmxapi.dir/mdsignals.cpp.o CMakeFiles/gmxapi.dir/session.cpp.o CMakeFiles/gmxapi.dir/status.cpp.o CMakeFiles/gmxapi.dir/system.cpp.o CMakeFiles/gmxapi.dir/version.cpp.o CMakeFiles/gmxapi.dir/workflow.cpp.o CMakeFiles/gmxapi.dir/tpr.cpp.o ../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libgmxapi.so.0.1.0 ../../../lib/libgmxapi.so.0 ../../../lib/libgmxapi.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ~/build/BUILD/gromacs-2020.1/mpich ~/build/BUILD/gromacs-2020.1 ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich + pushd mpich + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin ++ test mpich = openmpi ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=ARM_NEON_ASIMD ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 3 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/mpich + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/depend.internal". 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Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". 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Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". 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-fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make 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Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/action.transpose.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/accessors.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/enqueue.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.copy.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/energyelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/forceelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/md5sum.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/lifetime.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/transform.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/plan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp:59: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:36, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:37: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp:38: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.h:63, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:48, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp:67: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp:59: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp:41: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd 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CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:84: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.h:40, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.h:40, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp:60: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:75: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.h:47, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp:73: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits.h:54, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.h:47, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_3dfft_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_3dfft_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft.h:55, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.h:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils_ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils_ocl.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.cpp:42: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp:64: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp:58: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Linking CXX executable ../../bin/mdrun_mpich cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_mpich ../../lib/libgromacs_mdrun_mpich.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libfftw3f.so -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n mpich + module unload mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi ~/build/BUILD/gromacs-2020.1/openmpi ~/build/BUILD/gromacs-2020.1 + pushd openmpi + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin ++ test openmpi = openmpi ++ echo -DMPIEXEC_PREFLAGS=--oversubscribe ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=ARM_NEON_ASIMD ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DMPIEXEC_PREFLAGS=--oversubscribe -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 3 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/openmpi + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". Scanning dependencies of target clFFT make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/accessors.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/action.transpose.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/energyelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/forceelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.copy.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/lifetime.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/md5sum.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/transform.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/plan.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -w -std=c++14 -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread 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src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp:59: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:36, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:37: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.h:52, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernels.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp:38: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.h:63, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:48, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp:67: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp:59: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp:41: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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[ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:84: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.h:115, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.h:41, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp:47: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.h:40, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.h:40, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp:40: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp:60: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp:56: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:75: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.h:47, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp:73: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits.h:54, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.h:47, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.h:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp:39: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_3dfft_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_3dfft_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft.h:55, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_timings.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils_ocl.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_internal.cpp:50: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_caching.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/ocl_compiler.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/oclutils.cpp:42: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp:64: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp:58: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer.h:49, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange.h:45, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp:63: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp:48: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Linking CXX executable ../../bin/mdrun_openmpi cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_openmpi ../../lib/libgromacs_mdrun_openmpi.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libfftw3f.so -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n openmpi + module unload mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ~/build/BUILD/gromacs-2020.1/serial_d ~/build/BUILD/gromacs-2020.1 ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d + test -z '' + cp -al ../regressiontests-2020.1 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n '' ++ echo -DGMX_X11=ON ++ test '' = openmpi ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2020.1/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=ARM_NEON_ASIMD ' ' -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2020.1/serial_d/tests -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:213 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 3 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/posts/2018/fixing-imagick-error-unauthorized Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pygments' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/serial_d + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio 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Scanning dependencies of target vmddlopen make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/fileio/CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/vmd_molfile/vmddlopen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target vmddlopen make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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/builddir/build/BUILD/gromacs-2020.1/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp: In member function 'gmx::RVec gmx::DensityFittingForce::Impl::evaluateForce(const gmx::GaussianSpreadKernelParameters::PositionAndAmplitude&, gmx::basic_mdspan >)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp:101:17: warning: '' may be used uninitialized in this function [-Wmaybe-uninitialized] 101 | return {}; | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void read_vsite_database(const char*, std::vector*, std::vector*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:274:24: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/insert_molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/statistics/statistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c 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-fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/coordinatefile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadaptercontainer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/outputselector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setprecision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setstarttime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/settimestep.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setvelocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/report_methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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&& /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security 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CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o CMakeFiles/libgromacs.dir/utility/futil.cpp.o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o CMakeFiles/libgromacs.dir/utility/init.cpp.o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o CMakeFiles/libgromacs.dir/utility/logger.cpp.o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o CMakeFiles/libgromacs.dir/utility/path.cpp.o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/mdsignals.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/mdsignals.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src 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/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/session.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/session.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/session.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Linking CXX shared library ../../../lib/libgmxapi.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmxapi.so.0 -o ../../../lib/libgmxapi.so.0.1.0 CMakeFiles/gmxapi.dir/context.cpp.o CMakeFiles/gmxapi.dir/exceptions.cpp.o CMakeFiles/gmxapi.dir/gmxapi.cpp.o CMakeFiles/gmxapi.dir/md.cpp.o CMakeFiles/gmxapi.dir/mdmodule.cpp.o CMakeFiles/gmxapi.dir/mdsignals.cpp.o CMakeFiles/gmxapi.dir/session.cpp.o CMakeFiles/gmxapi.dir/status.cpp.o CMakeFiles/gmxapi.dir/system.cpp.o CMakeFiles/gmxapi.dir/version.cpp.o CMakeFiles/gmxapi.dir/workflow.cpp.o CMakeFiles/gmxapi.dir/tpr.cpp.o ../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libgmxapi.so.0.1.0 ../../../lib/libgmxapi.so.0 ../../../lib/libgmxapi.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich_d ~/build/BUILD/gromacs-2020.1/mpich_d ~/build/BUILD/gromacs-2020.1 + pushd mpich_d + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin ++ test mpich = openmpi ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=ARM_NEON_ASIMD ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:213 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 3 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/mpich_d + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". 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Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". 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Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". 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Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src 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src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/energyelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs 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Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c 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-fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security 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src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c 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-fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables 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src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c 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-fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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/usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp: In member function 'gmx::RVec gmx::DensityFittingForce::Impl::evaluateForce(const gmx::GaussianSpreadKernelParameters::PositionAndAmplitude&, gmx::basic_mdspan >)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp:101:17: warning: '' may be used uninitialized in this function [-Wmaybe-uninitialized] 101 | return {}; | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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-isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Linking CXX static library ../../lib/libgromacs_mdrun_mpich_d.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -E 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modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Linking CXX executable ../../bin/mdrun_mpich_d cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_mpich_d ../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libfftw3.so -lopenblas -lpthread -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n mpich + module unload mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi_d ~/build/BUILD/gromacs-2020.1/openmpi_d ~/build/BUILD/gromacs-2020.1 + pushd openmpi_d + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin ++ test openmpi = openmpi ++ echo -DMPIEXEC_PREFLAGS=--oversubscribe ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=ARM_NEON_ASIMD ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DMPIEXEC_PREFLAGS=--oversubscribe -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:213 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 3 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/openmpi_d + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd 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Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/forceelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/energyelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/compare.cpp make[2]: Leaving directory 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c 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-fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c 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-fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp: In member function 'gmx::RVec gmx::DensityFittingForce::Impl::evaluateForce(const gmx::GaussianSpreadKernelParameters::PositionAndAmplitude&, gmx::basic_mdspan >)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp:101:17: warning: '' may be used uninitialized in this function [-Wmaybe-uninitialized] 101 | return {}; | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c 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-fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c 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-fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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-fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: 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CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Linking CXX executable ../../bin/mdrun_openmpi_d cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_openmpi_d ../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libfftw3.so -lopenblas -lpthread -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n openmpi + module unload mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BhUKDu + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 ++ dirname /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 + cd gromacs-2020.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 24529 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 'INSTALL=/usr/bin/install -p' -C serial make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Built target clFFT /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Built target vmddlopen /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Built target scanner /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/share/template /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/share/template /builddir/build/BUILD/gromacs-2020.1/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs 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'/builddir/build/BUILD/gromacs-2020.1/serial' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-trjcat.1 -- Installing: 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/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/md/mdsignals.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/md/mdmodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/gromacsfwd.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/exceptions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/compat -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/compat/mdparams.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/compat/tpr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/session -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/session/resources.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/gmxapicompat.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so.0.1.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi-config.cmake make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 'INSTALL=/usr/bin/install -p' -C mpich make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Built target clFFT /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 3%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Built target modularsimulator /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 6%] Built target scanner /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/pbcutil/ishift.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/constants.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/mdrun_mpich -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/gmx-completion-mdrun_mpich.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' + test -n mpich + module unload mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 'INSTALL=/usr/bin/install -p' -C openmpi make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Built target clFFT /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 3%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Built target modularsimulator /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 6%] Built target scanner /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/pbcutil/ishift.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/constants.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/mdrun_openmpi -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' + test -n openmpi + module unload mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 'INSTALL=/usr/bin/install -p' -C serial_d make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target modularsimulator /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/share/template /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/share/template /builddir/build/BUILD/gromacs-2020.1/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target gmx /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: 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-- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/session -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/session/resources.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/gmxapicompat.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so.0.1.0 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so.0 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/cmake/gmxapi/gmxapi-config.cmake make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 'INSTALL=/usr/bin/install -p' -C mpich_d make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/mdrun_mpich_d -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/gmx-completion-mdrun_mpich_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' + test -n mpich + module unload mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvb3Blbm1waS1hYXJjaDY0IixbImZ1bGxOYW1lIl09Im1waS9vcGVubXBpLWFhcmNoNjQiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJtcGkvb3Blbm1waS1hYXJjaDY0Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9z ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 'INSTALL=/usr/bin/install -p' -C openmpi_d make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/mdrun_openmpi_d -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' + test -n openmpi + module unload mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 ~/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 ~/build/BUILD/gromacs-2020.1 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-mdrun_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-mdrun_mpich_d.bash .//usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2020.1-1.fc33 --unique-debug-suffix -2020.1-1.fc33.aarch64 --unique-debug-src-base gromacs-2020.1-1.fc33.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2020.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgromacs.so.5.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/bin/gmx_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so.0.1.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/bin/gmx extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgromacs.so.5.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgmxapi.so.0.1.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/bin/gmx extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/bin/gmx_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgromacs_d.so.5.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/mdrun_mpich extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/libgromacs_d.so.5.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/mdrun_mpich explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/mdrun_mpich_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/mpich/bin/mdrun_mpich_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/mdrun_openmpi extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/mdrun_openmpi explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/mdrun_openmpi_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/lib64/openmpi/bin/mdrun_openmpi_d original debug info size: 1481684kB, size after compression: 1141904kB /usr/lib/rpm/sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. cpio: serial/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory 40157 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.hy5bGw + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 26057 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/serial/lib + make -C serial VERBOSE=1 -j4 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 89 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build [ 0%] Built target mdrun_objlib make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Generating release version information make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= [ 1%] Built target clFFT make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 3%] Built target thread_mpi make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build [ 3%] Built target linearalgebra make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Built target vmddlopen make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= [ 4%] Built target modularsimulator make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target scanner Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". [ 5%] Built target view_objlib Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 5%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -Wno-comment -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 5%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Built target libgromacs make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Built target gmx make -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/depend [ 68%] Built target gmxapi make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/tests /builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/gmxtests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/gmxtests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/gmxtests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/gmxtests.dir/depend.internal". Scanning dependencies of target gmxtests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'tests/CMakeFiles/gmxtests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Built target gmxtests [ 68%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgtest.so -o ../../../../../lib/libgtest.so CMakeFiles/gtest.dir/src/gtest-all.cc.o -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". 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/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/refdata_xml.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/refdata_xml.cpp [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/xvgtest.cpp [ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' Scanning dependencies of target mdrun_test_infrastructure make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp [ 69%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energyreader.cpp [ 69%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energycomparison.cpp [ 71%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../lib/libgtest.so -lpthread [ 71%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Built target testutils-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Built target utility-mpi-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/moduletest.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mdmodulenotification.cpp [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/terminationhelper.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectorycomparison.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Built target testutils-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 73%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 73%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectoryreader.cpp [ 73%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 73%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 73%] Built target mdrun_test_infrastructure [ 73%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 73%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 73%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 74%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 74%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Built target applied_forces-test [ 74%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 74%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 74%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Built target listed_forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 74%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 74%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 74%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 76%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target mdlib-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:43: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 76%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target gpu_utils-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 77%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Built target hardware-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 77%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 77%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 78%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Built target ewald-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 78%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 79%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 79%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 80%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Built target mdspan-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 80%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 80%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 80%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 82%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Built target utility-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 83%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 83%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 83%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Built target random-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 83%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 83%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Built target taskassignment-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 84%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 84%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Built target math-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 85%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Built target topology-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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/usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target options-test [ 86%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 86%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 86%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 86%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 86%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 86%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target awh-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/entropy.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 86%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_traj.cpp [ 86%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 86%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target compat-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Scanning dependencies of target pdb2gmx3-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_msd.cpp [ 86%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 86%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target gmxana-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Scanning dependencies of target pdb2gmx2-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target pdb2gmx3-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend.internal". Scanning dependencies of target pdb2gmx1-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 86%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target pdb2gmx2-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genconf.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Built target pdb2gmx1-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genion.cpp [ 87%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 87%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/expfit.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 88%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Built target correlations-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/datatest.cpp [ 88%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/readir.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Built target simd-test make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Scanning dependencies of target coordinateio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/builder.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 91%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 91%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 91%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target gmxpreprocess-test make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadapters.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/requirements.cpp [ 91%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/dump.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setatoms.cpp [ 91%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/report_methods.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setbothtime.cpp [ 91%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/trjconv.cpp [ 91%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target analysisdata-test-shared make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setstarttime.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/settimestep.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 91%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/testmodule.cpp [ 91%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target tool-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 91%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target coordinateio-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/compressed_x_output.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/densityfittingmodule.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/exactcontinuation.cpp [ 92%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/grompp.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/helpwriting.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/initialconstraints.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Built target fileio-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 92%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 92%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/interactiveMD.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/outputfiles.cpp [ 92%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Built target selection-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/domain_decomposition.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/orires.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/nonbonded_bench.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simulator.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/normalmodes.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp:57: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/swapcoords.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/rerun.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisim.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/termination.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectory_writing.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisimtest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp:57: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/replicaexchange.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simple_mdrun.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Built target mdrun-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Scanning dependencies of target mdrun-tpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tpitest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Built target mdrun-mpi-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-coordination-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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-o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". Scanning dependencies of target gmxapi-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/restraint.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Built target mdrun-non-integrator-test make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". Scanning dependencies of target gmxapi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/restraint.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Built target mdrun-tpi-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Scanning dependencies of target workflow-details-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 96%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../../bin/workflow-details-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/version.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Built target workflow-details-mpi-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= [ 96%] Linking CXX executable ../../../../bin/mdrun-mpi-coordination-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target workflow-details-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/version.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Built target mdrun-mpi-coordination-test [ 96%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 97%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/gmxapi-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 97%] Built target gmxapi-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 97%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 98%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target gmxapi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target workflow-details-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/analysisdata.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-test cd 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../../../../lib/libgtest.so -lpthread [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 98%] Built target mdrunutility-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target mdrunutility-mpi-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/arraydata.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/average.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/histogram.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/select.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/lifetime.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target analysisdata-test [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target trajectoryanalysis-test [100%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/serial Start 1: TestUtilsUnitTests 1/56 Test #1: TestUtilsUnitTests .................. Passed 0.15 sec Start 2: TestUtilsMpiUnitTests 2/56 Test #2: TestUtilsMpiUnitTests ............... Passed 0.03 sec Start 3: UtilityUnitTests 3/56 Test #3: UtilityUnitTests .................... Passed 0.06 sec Start 4: UtilityMpiUnitTests 4/56 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec Start 5: MdlibUnitTest 5/56 Test #5: MdlibUnitTest ....................... Passed 0.18 sec Start 6: AppliedForcesUnitTest 6/56 Test #6: AppliedForcesUnitTest ............... Passed 0.04 sec Start 7: ListedForcesTest 7/56 Test #7: ListedForcesTest .................... Passed 0.23 sec Start 8: CommandLineUnitTests 8/56 Test #8: CommandLineUnitTests ................ Passed 0.06 sec Start 9: DomDecTests 9/56 Test #9: DomDecTests ......................... Passed 0.02 sec Start 10: EwaldUnitTests 10/56 Test #10: EwaldUnitTests ...................... Passed 0.42 sec Start 11: FFTUnitTests 11/56 Test #11: FFTUnitTests ........................ Passed 0.05 sec Start 12: GpuUtilsUnitTests 12/56 Test #12: GpuUtilsUnitTests ................... Passed 0.02 sec Start 13: HardwareUnitTests 13/56 Test #13: HardwareUnitTests ................... Passed 0.04 sec Start 14: MathUnitTests 14/56 Test #14: MathUnitTests ....................... Passed 0.10 sec Start 15: MdrunUtilityUnitTests 15/56 Test #15: MdrunUtilityUnitTests ............... Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/56 Test #16: MdrunUtilityMpiUnitTests ............ Passed 0.03 sec Start 17: MDSpanTests 17/56 Test #17: MDSpanTests ......................... Passed 0.02 sec Start 18: OnlineHelpUnitTests 18/56 Test #18: OnlineHelpUnitTests ................. Passed 0.03 sec Start 19: OptionsUnitTests 19/56 Test #19: OptionsUnitTests .................... Passed 0.03 sec Start 20: PbcutilUnitTest 20/56 Test #20: PbcutilUnitTest ..................... Passed 0.02 sec Start 21: RandomUnitTests 21/56 Test #21: RandomUnitTests ..................... Passed 0.03 sec Start 22: RestraintTests 22/56 Test #22: RestraintTests ...................... Passed 0.02 sec Start 23: TableUnitTests 23/56 Test #23: TableUnitTests ...................... Passed 0.11 sec Start 24: TaskAssignmentUnitTests 24/56 Test #24: TaskAssignmentUnitTests ............. Passed 0.02 sec Start 25: TopologyTest 25/56 Test #25: TopologyTest ........................ Passed 0.02 sec Start 26: PullTest 26/56 Test #26: PullTest ............................ Passed 0.02 sec Start 27: AwhTest 27/56 Test #27: AwhTest ............................. Passed 0.04 sec Start 28: SimdUnitTests 28/56 Test #28: SimdUnitTests ....................... Passed 0.06 sec Start 29: CompatibilityHelpersTests 29/56 Test #29: CompatibilityHelpersTests ........... Passed 0.02 sec Start 30: GmxAnaTest 30/56 Test #30: GmxAnaTest .......................... Passed 1.77 sec Start 31: GmxPreprocessTests 31/56 Test #31: GmxPreprocessTests .................. Passed 1.69 sec Start 32: Pdb2gmx1Test 32/56 Test #32: Pdb2gmx1Test ........................ Passed 2.27 sec Start 33: Pdb2gmx2Test 33/56 Test #33: Pdb2gmx2Test ........................ Passed 1.95 sec Start 34: Pdb2gmx3Test 34/56 Test #34: Pdb2gmx3Test ........................ Passed 2.05 sec Start 35: CorrelationsTest 35/56 Test #35: CorrelationsTest .................... Passed 0.06 sec Start 36: AnalysisDataUnitTests 36/56 Test #36: AnalysisDataUnitTests ............... Passed 0.08 sec Start 37: CoordinateIOTests 37/56 Test #37: CoordinateIOTests ................... Passed 0.18 sec Start 38: TrajectoryAnalysisUnitTests 38/56 Test #38: TrajectoryAnalysisUnitTests ......... Passed 1.29 sec Start 39: EnergyAnalysisUnitTests 39/56 Test #39: EnergyAnalysisUnitTests ............. Passed 0.09 sec Start 40: ToolUnitTests 40/56 Test #40: ToolUnitTests ....................... Passed 1.29 sec Start 41: FileIOTests 41/56 Test #41: FileIOTests ......................... Passed 0.03 sec Start 42: SelectionUnitTests 42/56 Test #42: SelectionUnitTests .................. Passed 0.28 sec Start 43: MdrunTests 43/56 Test #43: MdrunTests .......................... Passed 2.33 sec Start 44: MdrunNonIntegratorTests 44/56 Test #44: MdrunNonIntegratorTests ............. Passed 2.04 sec Start 45: MdrunTpiTests 45/56 Test #45: MdrunTpiTests ....................... Passed 1.23 sec Start 46: MdrunMpiTests 46/56 Test #46: MdrunMpiTests ....................... Passed 51.67 sec Start 47: MdrunMpiCoordinationTestsOneRank 47/56 Test #47: MdrunMpiCoordinationTestsOneRank .... Passed 0.02 sec Start 48: MdrunMpiCoordinationTestsTwoRanks 48/56 Test #48: MdrunMpiCoordinationTestsTwoRanks ... Passed 0.02 sec Start 49: GmxapiExternalInterfaceTests 49/56 Test #49: GmxapiExternalInterfaceTests ........ Passed 1.20 sec Start 50: GmxapiMpiTests 50/56 Test #50: GmxapiMpiTests ...................... Passed 1.19 sec Start 51: GmxapiInternalInterfaceTests 51/56 Test #51: GmxapiInternalInterfaceTests ........ Passed 1.10 sec Start 52: GmxapiInternalsMpiTests 52/56 Test #52: GmxapiInternalsMpiTests ............. Passed 1.10 sec Start 53: regressiontests/complex 53/56 Test #53: regressiontests/complex ............. Passed 73.29 sec Start 54: regressiontests/freeenergy 54/56 Test #54: regressiontests/freeenergy .......... Passed 11.25 sec Start 55: regressiontests/rotation 55/56 Test #55: regressiontests/rotation ............ Passed 7.52 sec Start 56: regressiontests/essentialdynamics 56/56 Test #56: regressiontests/essentialdynamics ... Passed 2.34 sec 100% tests passed, 0 tests failed out of 56 Label Time Summary: GTest = 76.83 sec*proc (52 tests) IntegrationTest = 63.65 sec*proc (9 tests) MpiTest = 54.08 sec*proc (8 tests) SlowTest = 0.04 sec*proc (2 tests) UnitTest = 13.15 sec*proc (41 tests) Total Test time (real) = 171.33 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target run-ctest-nophys make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/mpich/lib + make -C mpich VERBOSE=1 -j4 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 87 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake [ 1%] Built target clFFT make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 2%] Built target thread_mpi make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= [ 2%] Built target linearalgebra make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build [ 2%] Built target scanner [ 4%] Built target modularsimulator make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd 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CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 71%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o /usr/bin/ranlib ../../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem 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/builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/filematchers.cpp cd 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/interactivetest.cpp [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/loggertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/loggertest.cpp [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpi_printer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/mpi_printer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/mpi_printer.cpp [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/mpitest.cpp [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/refdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/refdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/refdata.cpp [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/refdata_xml.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 73%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a 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../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' Scanning dependencies of target utility-mpi-test Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 73%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 74%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 74%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Built target testutils-mpi-test [ 74%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 77%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Built target testutils-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 78%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 79%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 79%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 79%] Built target selection-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 79%] Built target listed_forces-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 79%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 79%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 79%] Built target onlinehelp-test-shared make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 79%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 80%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Built target domdec-test [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 82%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Built target mdlib-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Built target ewald-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 83%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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'/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target fft-test [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 83%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target hardware-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 83%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:43: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 83%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libOpenCL.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target gpu_utils-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 85%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 85%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 87%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target utility-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target onlinehelp-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 87%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 87%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 87%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target mdspan-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target pbcutil-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 88%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 89%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 89%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 89%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 90%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Built target random-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 91%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 93%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 93%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 93%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 93%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 93%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Built target topology-test [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 93%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 93%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 93%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Built target math-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 94%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Built target awh-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 94%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Built target options-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 96%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 97%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 97%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Built target compat-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 98%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 98%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 98%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Built target fileio-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". [ 98%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Built target simd-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [100%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [100%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [100%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrunutility-mpi-test [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrunutility-test [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/mpich Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.10 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.11 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.04 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.05 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.11 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.02 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.10 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.03 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.02 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.27 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.05 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.02 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.04 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.10 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.02 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.02 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.03 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.02 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.03 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.02 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.11 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.02 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.02 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.02 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.06 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.03 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.03 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.20 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 1.75 sec*proc (31 tests) MpiTest = 0.21 sec*proc (3 tests) UnitTest = 1.75 sec*proc (31 tests) Total Test time (real) = 1.81 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/tests /builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/mpich/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' + test -n mpich + module unload mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/openmpi/lib + make -C openmpi VERBOSE=1 -j4 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 87 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/clFFT/src /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake [ 1%] Built target clFFT make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 2%] Built target thread_mpi make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend [ 2%] Built target linearalgebra make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest 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depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Built target scanner make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc [ 4%] Built target modularsimulator -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Built target libgromacs [ 70%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 71%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o /usr/bin/ranlib ../../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/conftest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/conftest.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/filematchers.cpp [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/interactivetest.cpp.o cd 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CMakeFiles/testutils.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/interactivetest.cpp [ 71%] Building CXX object src/testutils/CMakeFiles/testutils.dir/loggertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/xvgtest.cpp [ 73%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem 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CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' Scanning dependencies of target utility-mpi-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 73%] 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 74%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 74%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Built target testutils-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= [ 74%] Built target utility-mpi-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o Scanning dependencies of target mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 77%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Built target testutils-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 78%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 79%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 79%] Built target selection-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 79%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 79%] Built target listed_forces-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 79%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 79%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 79%] Built target onlinehelp-test-shared make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 79%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_types_host.h:56, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_internal.h:64, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 80%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Built target domdec-test [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 82%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:55: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.h:51, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gputraits_ocl.h:46, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/devicebuffer_datatype.h:57, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.h:53, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp:49: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target mdlib-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 82%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target ewald-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target fft-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 83%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 85%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Built target utility-test make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 85%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:43: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 85%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Built target mdrunutility-test-shared make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libOpenCL.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Built target gpu_utils-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 87%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 87%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 87%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Built target onlinehelp-test [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 87%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 87%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Built target mdspan-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 87%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 88%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 88%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 89%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 89%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 89%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Built target random-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 90%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Built target taskassignment-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 91%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Built target topology-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Built target table-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 93%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Built target pull-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 93%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 93%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Built target math-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 94%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 95%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Built target awh-test [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 96%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ 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-funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 96%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Built target compat-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Built target fileio-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [100%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [100%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [100%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrunutility-test [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [100%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target simd-test [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [100%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wno-comment -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas /usr/lib64/libOpenCL.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/openmpi Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.67 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.19 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.13 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.21 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.25 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.11 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.23 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.16 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.15 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.41 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.18 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.15 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.17 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.22 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.15 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 0.21 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.11 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.15 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.12 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.11 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.12 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.11 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.24 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.11 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.11 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.11 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.16 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.19 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.11 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.12 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.33 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 5.84 sec*proc (31 tests) MpiTest = 0.62 sec*proc (3 tests) UnitTest = 5.84 sec*proc (31 tests) Total Test time (real) = 6.09 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/openmpi/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' + test -n openmpi + module unload mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/serial_d/lib + make -C serial_d VERBOSE=1 -j4 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 96 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake [ 0%] Built target scanner make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target mdrun_objlib make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build [ 2%] Built target thread_mpi make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Built target linearalgebra make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target view_objlib Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs 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src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 67%] Built target gmx make -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/depend [ 68%] Built target gmxapi make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/gmxtests.dir/depend.internal". Scanning dependencies of target gmxtests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'tests/CMakeFiles/gmxtests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Built target gmxtests [ 68%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgtest.so -o ../../../../../lib/libgtest.so CMakeFiles/gtest.dir/src/gtest-all.cc.o -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -D_GNU_SOURCE=1 -Dgmock_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 68%] Linking CXX shared library ../../../../lib/libgmock.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmock.so -o ../../../../lib/libgmock.so CMakeFiles/gmock.dir/src/gmock-all.cc.o -lpthread ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tprfilegenerator.cpp [ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/xvgtest.cpp [ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 69%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build Scanning dependencies of target testutils-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o [ 70%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp Scanning dependencies of target mdrun_test_infrastructure make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energyreader.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energycomparison.cpp [ 71%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../lib/libgtest.so -lpthread [ 71%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Built target utility-mpi-test [ 71%] Built target testutils-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/moduletest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mdmodulenotification.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/terminationhelper.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectorycomparison.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectoryreader.cpp [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 72%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Built target mdrun_test_infrastructure make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 72%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 72%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 72%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Built target testutils-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 73%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target listed_forces-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 75%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target applied_forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 75%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 75%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && 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CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 77%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 78%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 78%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Built target mdlib-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 78%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Built target ewald-test make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 78%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Built target mdrunutility-test-shared make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 80%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 80%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 80%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 80%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 81%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target mdspan-test [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target utility-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 82%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 82%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 82%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 82%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 83%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 83%] Built target random-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 83%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Built target taskassignment-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 83%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Built target table-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Built target topology-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Built target pull-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 83%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Built target math-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/entropy.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 83%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_traj.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 84%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 84%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_msd.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 [ 85%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 85%] Built target awh-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' Scanning dependencies of target pdb2gmx3-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build [ 85%] Built target gmxana-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Scanning dependencies of target pdb2gmx2-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 86%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Built target pdb2gmx3-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend.internal". Scanning dependencies of target pdb2gmx1-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Built target pdb2gmx2-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 86%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genconf.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Built target compat-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genion.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/expfit.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 88%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 88%] Built target pdb2gmx1-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 88%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/datatest.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 88%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 88%] Built target correlations-test make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Scanning dependencies of target coordinateio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 88%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/readir.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadapters.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 89%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Built target gmxpreprocess-test make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 89%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Built target analysisdata-test-shared make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/dump.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 89%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/report_methods.cpp [ 89%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Built target energyanalysis-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/trjconv.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/requirements.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setatoms.cpp [ 91%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 91%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Built target tool-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setbothtime.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setstarttime.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Built target simd-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o Scanning dependencies of target mdrun-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/settimestep.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/compressed_x_output.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/testmodule.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/densityfittingmodule.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 92%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Built target coordinateio-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/exactcontinuation.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 92%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 92%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Built target fileio-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/domain_decomposition.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/nonbonded_bench.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/normalmodes.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/grompp.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/helpwriting.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/initialconstraints.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/rerun.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisim.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/interactiveMD.cpp [ 93%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/outputfiles.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisimtest.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simple_mdrun.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/orires.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/replicaexchange.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 93%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simulator.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Built target mdrun-mpi-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Scanning dependencies of target mdrun-tpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tpitest.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 94%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Built target mdrun-non-integrator-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". [ 94%] Built target selection-test make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' Scanning dependencies of target mdrun-mpi-coordination-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/periodicactions.cpp Scanning dependencies of target gmxapi-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/restraint.cpp [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Built target mdrun-tpi-test make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". Scanning dependencies of target gmxapi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/restraint.cpp [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/version.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/swapcoords.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-mpi-coordination-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/runner.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target mdrun-mpi-coordination-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Scanning dependencies of target workflow-details-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/termination.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/version.cpp [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/stopsignaler.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../../bin/workflow-details-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/runner.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target workflow-details-mpi-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". Scanning dependencies of target workflow-details-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectory_writing.cpp [ 95%] Linking CXX executable ../../../../bin/gmxapi-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target gmxapi-mpi-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/stopsignaler.cpp [ 96%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Built target workflow-details-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 97%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 97%] Built target gmxapi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend [ 98%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target mdrun-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target mdrunutility-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/analysisdata.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target mdrunutility-mpi-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd 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-fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/arraydata.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target commandline-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/distance.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/average.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/select.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/histogram.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/lifetime.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target analysisdata-test [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target trajectoryanalysis-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/serial_d Start 1: TestUtilsUnitTests 1/56 Test #1: TestUtilsUnitTests .................. Passed 0.15 sec Start 2: TestUtilsMpiUnitTests 2/56 Test #2: TestUtilsMpiUnitTests ............... Passed 0.03 sec Start 3: UtilityUnitTests 3/56 Test #3: UtilityUnitTests .................... Passed 0.05 sec Start 4: UtilityMpiUnitTests 4/56 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec Start 5: MdlibUnitTest 5/56 Test #5: MdlibUnitTest ....................... Passed 0.15 sec Start 6: AppliedForcesUnitTest 6/56 Test #6: AppliedForcesUnitTest ............... Passed 0.04 sec Start 7: ListedForcesTest 7/56 Test #7: ListedForcesTest .................... Passed 0.12 sec Start 8: CommandLineUnitTests 8/56 Test #8: CommandLineUnitTests ................ Passed 0.05 sec Start 9: DomDecTests 9/56 Test #9: DomDecTests ......................... Passed 0.02 sec Start 10: EwaldUnitTests 10/56 Test #10: EwaldUnitTests ...................... Passed 0.33 sec Start 11: FFTUnitTests 11/56 Test #11: FFTUnitTests ........................ Passed 0.05 sec Start 12: GpuUtilsUnitTests 12/56 Test #12: GpuUtilsUnitTests ................... Passed 0.02 sec Start 13: HardwareUnitTests 13/56 Test #13: HardwareUnitTests ................... Passed 0.04 sec Start 14: MathUnitTests 14/56 Test #14: MathUnitTests ....................... Passed 0.15 sec Start 15: MdrunUtilityUnitTests 15/56 Test #15: MdrunUtilityUnitTests ............... Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/56 Test #16: MdrunUtilityMpiUnitTests ............ Passed 0.03 sec Start 17: MDSpanTests 17/56 Test #17: MDSpanTests ......................... Passed 0.02 sec Start 18: OnlineHelpUnitTests 18/56 Test #18: OnlineHelpUnitTests ................. Passed 0.02 sec Start 19: OptionsUnitTests 19/56 Test #19: OptionsUnitTests .................... Passed 0.03 sec Start 20: PbcutilUnitTest 20/56 Test #20: PbcutilUnitTest ..................... Passed 0.02 sec Start 21: RandomUnitTests 21/56 Test #21: RandomUnitTests ..................... Passed 0.03 sec Start 22: RestraintTests 22/56 Test #22: RestraintTests ...................... Passed 0.02 sec Start 23: TableUnitTests 23/56 Test #23: TableUnitTests ...................... Passed 0.34 sec Start 24: TaskAssignmentUnitTests 24/56 Test #24: TaskAssignmentUnitTests ............. Passed 0.02 sec Start 25: TopologyTest 25/56 Test #25: TopologyTest ........................ Passed 0.02 sec Start 26: PullTest 26/56 Test #26: PullTest ............................ Passed 0.02 sec Start 27: AwhTest 27/56 Test #27: AwhTest ............................. Passed 0.03 sec Start 28: SimdUnitTests 28/56 Test #28: SimdUnitTests ....................... Passed 0.08 sec Start 29: CompatibilityHelpersTests 29/56 Test #29: CompatibilityHelpersTests ........... Passed 0.02 sec Start 30: GmxAnaTest 30/56 Test #30: GmxAnaTest .......................... Passed 2.26 sec Start 31: GmxPreprocessTests 31/56 Test #31: GmxPreprocessTests .................. Passed 1.92 sec Start 32: Pdb2gmx1Test 32/56 Test #32: Pdb2gmx1Test ........................ Passed 2.23 sec Start 33: Pdb2gmx2Test 33/56 Test #33: Pdb2gmx2Test ........................ Passed 1.87 sec Start 34: Pdb2gmx3Test 34/56 Test #34: Pdb2gmx3Test ........................ Passed 2.03 sec Start 35: CorrelationsTest 35/56 Test #35: CorrelationsTest .................... Passed 0.06 sec Start 36: AnalysisDataUnitTests 36/56 Test #36: AnalysisDataUnitTests ............... Passed 0.07 sec Start 37: CoordinateIOTests 37/56 Test #37: CoordinateIOTests ................... Passed 0.18 sec Start 38: TrajectoryAnalysisUnitTests 38/56 Test #38: TrajectoryAnalysisUnitTests ......... Passed 1.46 sec Start 39: EnergyAnalysisUnitTests 39/56 Test #39: EnergyAnalysisUnitTests ............. Passed 0.09 sec Start 40: ToolUnitTests 40/56 Test #40: ToolUnitTests ....................... Passed 1.64 sec Start 41: FileIOTests 41/56 Test #41: FileIOTests ......................... Passed 0.03 sec Start 42: SelectionUnitTests 42/56 Test #42: SelectionUnitTests .................. Passed 0.23 sec Start 43: MdrunTests 43/56 Test #43: MdrunTests .......................... Passed 8.67 sec Start 44: MdrunNonIntegratorTests 44/56 Test #44: MdrunNonIntegratorTests ............. Passed 10.83 sec Start 45: MdrunTpiTests 45/56 Test #45: MdrunTpiTests ....................... Passed 1.64 sec Start 46: MdrunMpiTests 46/56 Test #46: MdrunMpiTests ....................... Passed 52.36 sec Start 47: MdrunMpiCoordinationTestsOneRank 47/56 Test #47: MdrunMpiCoordinationTestsOneRank .... Passed 39.33 sec Start 48: MdrunMpiCoordinationTestsTwoRanks 48/56 Test #48: MdrunMpiCoordinationTestsTwoRanks ... Passed 39.38 sec Start 49: GmxapiExternalInterfaceTests 49/56 Test #49: GmxapiExternalInterfaceTests ........ Passed 4.82 sec Start 50: GmxapiMpiTests 50/56 Test #50: GmxapiMpiTests ...................... Passed 4.82 sec Start 51: GmxapiInternalInterfaceTests 51/56 Test #51: GmxapiInternalInterfaceTests ........ Passed 1.46 sec Start 52: GmxapiInternalsMpiTests 52/56 Test #52: GmxapiInternalsMpiTests ............. Passed 1.46 sec Start 53: regressiontests/complex 53/56 Test #53: regressiontests/complex ............. Passed 74.65 sec Start 54: regressiontests/freeenergy 54/56 Test #54: regressiontests/freeenergy .......... Passed 13.55 sec Start 55: regressiontests/rotation 55/56 Test #55: regressiontests/rotation ............ Passed 9.74 sec Start 56: regressiontests/essentialdynamics 56/56 Test #56: regressiontests/essentialdynamics ... Passed 2.94 sec 100% tests passed, 0 tests failed out of 56 Label Time Summary: GTest = 180.72 sec*proc (52 tests) IntegrationTest = 88.31 sec*proc (9 tests) MpiTest = 137.42 sec*proc (8 tests) SlowTest = 78.71 sec*proc (2 tests) UnitTest = 13.70 sec*proc (41 tests) Total Test time (real) = 281.69 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target run-ctest-nophys make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/mpich_d/lib + make -C mpich_d VERBOSE=1 -j4 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 99 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake [ 0%] Built target scanner make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 1%] Built target linearalgebra make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend [ 2%] Built target thread_mpi make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build [ 4%] Built target modularsimulator make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/mpich-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Built target libgromacs [ 71%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". 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74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testoptions.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/textblockmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/tprfilegenerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tprfilegenerator.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 74%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[3]: Entering directory 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 75%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= [ 75%] Built target testutils-mpi-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 76%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Built target testutils-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 78%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Built target selection-test [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Built target listed_forces-test [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= [ 80%] Built target mdlib-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Built target onlinehelp-test-shared make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 82%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target utility-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target fft-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 83%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 83%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target gpu_utils-test make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 85%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Built target mdrunutility-test-shared make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS 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/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Built target mdspan-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 86%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 86%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Built target math-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 86%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 86%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Built target random-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 88%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 88%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Built target taskassignment-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 89%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Built target table-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Built target topology-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 90%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Built target pull-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 90%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 91%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 93%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 93%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 93%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 93%] Built target options-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 93%] Built target awh-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend [ 93%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 93%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 94%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 94%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 95%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Built target compat-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 96%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 96%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Built target mdrunutility-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Built target fileio-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target commandline-test [ 98%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target simd-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/mpich_d Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.08 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.07 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.04 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.05 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.11 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.02 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.11 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.03 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.02 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.30 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.05 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.02 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.04 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.15 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 0.06 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.02 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.02 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.03 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.02 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.03 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.02 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.33 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.02 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.02 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.02 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.08 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.03 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.03 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.21 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 2.02 sec*proc (31 tests) MpiTest = 0.17 sec*proc (3 tests) UnitTest = 2.02 sec*proc (31 tests) Total Test time (real) = 2.09 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' + test -n mpich + module unload mpi/mpich-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-aarch64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-aarch64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-aarch64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-aarch64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-aarch64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-aarch64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-aarch64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-aarch64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-aarch64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/lib + make -C openmpi_d VERBOSE=1 -j4 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 99 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake [ 0%] Built target scanner make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 1%] Built target linearalgebra [ 2%] Built target thread_mpi make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-aarch64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc [ 4%] Built target modularsimulator -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Built target libgromacs [ 71%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 72%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o /usr/bin/ranlib ../../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem 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/builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testoptions.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/textblockmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/tprfilegenerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tprfilegenerator.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/xvgtest.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 74%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Entering directory 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi_d.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 75%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Built target utility-mpi-test [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 75%] Built target testutils-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi_d.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Built target testutils-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 76%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Built target selection-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 77%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 79%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 79%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 79%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 79%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 79%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 79%] Built target listed_forces-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". 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Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd 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-fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Built target mdlib-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 81%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Built target onlinehelp-test-shared make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 81%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 81%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 81%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 82%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Built target utility-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 82%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Built target hardware-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 83%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 84%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 84%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Built target gpu_utils-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 84%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 85%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 85%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 85%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Built target ewald-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Built target onlinehelp-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 85%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 85%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Built target mdspan-test [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 86%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 86%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 86%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 86%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 87%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 87%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Built target table-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Built target math-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 88%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 88%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Built target taskassignment-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 88%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 89%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 89%] Built target pull-test [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 92%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Built target topology-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 92%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Built target awh-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 92%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Built target options-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Built target fileio-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 95%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Built target compat-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 96%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Built target mdrunutility-test [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target simd-test [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 /lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm /usr/lib/gcc/aarch64-redhat-linux/10/libgomp.so /usr/lib64/libpthread.so /usr/lib64/liblmfit.so /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/openmpi_d Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.47 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.20 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.13 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.21 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.20 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.11 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.24 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.16 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.15 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.42 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.14 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.11 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.13 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.24 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.15 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 0.22 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.11 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.16 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.16 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.16 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.12 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.11 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.47 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.11 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.15 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.15 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.16 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.21 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.16 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.16 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.30 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 6.01 sec*proc (31 tests) MpiTest = 0.62 sec*proc (3 tests) UnitTest = 6.01 sec*proc (31 tests) Total Test time (real) = 6.26 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' + test -n openmpi + module unload mpi/openmpi-aarch64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-aarch64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Processing files: gromacs-2020.1-1.fc33.aarch64 Provides: gromacs = 2020.1-1.fc33 gromacs(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libX11.so.6()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgromacs.so.5()(64bit) libgromacs_d.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH) Obsoletes: gromacs-csh < 2016.1-2 gromacs-ngmx < 5.0.4-1 gromacs-zsh < 2016.1-2 Recommends: gromacs-opencl = 2020.1-1.fc33 Processing files: gromacs-common-2020.1-1.fc33.noarch Provides: gromacs-bash = 2020.1-1.fc33 gromacs-common = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-bash < 5.0.4-1 Processing files: gromacs-opencl-2020.1-1.fc33.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.l0YZit + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + DOCDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs-opencl + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs-opencl + cp -pr docs/OpenCLTODOList.txt /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64/usr/share/doc/gromacs-opencl + RPM_EC=0 ++ jobs -p + exit 0 Provides: gromacs-opencl = 2020.1-1.fc33 gromacs-opencl(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Suggests: beignet mesa-libOpenCL pocl Processing files: gromacs-doc-2020.1-1.fc33.noarch Provides: gromacs-doc = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-common < 5.0.5-2 Processing files: gromacs-devel-2020.1-1.fc33.aarch64 Provides: cmake(gmxapi) = 0.1.0 cmake(gromacs) = 2020.1 cmake(gromacs_d) = 2020.1 gromacs-devel = 2020.1-1.fc33 gromacs-devel(aarch-64) = 2020.1-1.fc33 pkgconfig(libgromacs) = 2020.1 pkgconfig(libgromacs_d) = 2020.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem libgmxapi.so.0()(64bit) libgromacs.so.5()(64bit) libgromacs_d.so.5()(64bit) pkgconfig(fftw3) pkgconfig(fftw3f) Obsoletes: gromacs-mpich-devel < 2016-0.1.20160318gitbec9c87 gromacs-openmpi-devel < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-libs-2020.1-1.fc33.aarch64 Provides: gromacs-libs = 2020.1-1.fc33 gromacs-libs(aarch-64) = 2020.1-1.fc33 libgmxapi.so.0()(64bit) libgromacs.so.5()(64bit) libgromacs_d.so.5()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgromacs_d.so.5()(64bit) libhwloc.so.15()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Processing files: gromacs-openmpi-2020.1-1.fc33.aarch64 Provides: gromacs-openmpi = 2020.1-1.fc33 gromacs-openmpi(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libhwloc.so.15()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-aarch64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Obsoletes: gromacs-openmpi-libs < 2016-0.1.20160318gitbec9c87 Recommends: gromacs-opencl = 2020.1-1.fc33 Processing files: gromacs-mpich-2020.1-1.fc33.aarch64 Provides: gromacs-mpich = 2020.1-1.fc33 gromacs-mpich(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libhwloc.so.15()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-aarch64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Obsoletes: gromacs-mpich-libs < 2016-0.1.20160318gitbec9c87 Recommends: gromacs-opencl = 2020.1-1.fc33 Processing files: gromacs-debugsource-2020.1-1.fc33.aarch64 Provides: gromacs-debugsource = 2020.1-1.fc33 gromacs-debugsource(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: gromacs-debuginfo-2020.1-1.fc33.aarch64 Provides: debuginfo(build-id) = 0a9579f327e25c8c3b4a19216cecd111e85e8522 debuginfo(build-id) = ef95e5b1488bffe8b0cffdd08d09fc5f4747e750 gromacs-debuginfo = 2020.1-1.fc33 gromacs-debuginfo(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(aarch-64) = 2020.1-1.fc33 Processing files: gromacs-libs-debuginfo-2020.1-1.fc33.aarch64 Provides: debuginfo(build-id) = 849c7a48e5fc8bb496c4835ffd06b2720045f136 debuginfo(build-id) = bacd8aa04f425fb9c094a70f3a24deedead81932 debuginfo(build-id) = d14f11098d69b069f4ad4b1967b8652a3aa3bdab gromacs-libs-debuginfo = 2020.1-1.fc33 gromacs-libs-debuginfo(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(aarch-64) = 2020.1-1.fc33 Processing files: gromacs-openmpi-debuginfo-2020.1-1.fc33.aarch64 Provides: debuginfo(build-id) = 5b7f39fb168a6433ee0ceadc427c42286ac19f97 debuginfo(build-id) = 775ad3a84323ce7faee5d110c8327eacd6bbd01d gromacs-openmpi-debuginfo = 2020.1-1.fc33 gromacs-openmpi-debuginfo(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(aarch-64) = 2020.1-1.fc33 Processing files: gromacs-mpich-debuginfo-2020.1-1.fc33.aarch64 Provides: debuginfo(build-id) = 1aec706933f1ab25829fdf327166306e7e3030a2 debuginfo(build-id) = a26d5eab493a341b303c6ceacea03b5c9a886453 gromacs-mpich-debuginfo = 2020.1-1.fc33 gromacs-mpich-debuginfo(aarch-64) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(aarch-64) = 2020.1-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 Wrote: /builddir/build/RPMS/gromacs-opencl-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-devel-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-common-2020.1-1.fc33.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-doc-2020.1-1.fc33.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-libs-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-debugsource-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-debuginfo-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-debuginfo-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-debuginfo-2020.1-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/gromacs-libs-debuginfo-2020.1-1.fc33.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.In4E6s + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild gromacs-2020.1-1.fc33.src.rpm Finish: build phase for gromacs-2020.1-1.fc33.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623758.278817/root/var/log/dnf.rpm.log /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623758.278817/root/var/log/dnf.librepo.log /var/lib/mock/1297528-fedora-rawhide-aarch64-1583623758.278817/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/gromacs-2020.1-1.fc33.src.rpm) Config(child) 139 minutes 37 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run INFO: mock.py version 2.0 starting (python version = 3.7.6)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run Start: scrub ['cache'] INFO: scrubbing cache for child Finish: scrub ['cache'] Finish: run