Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'], chrootPath='/var/lib/mock/827452-epel-7-x86_64-1542810727.406162/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock']unshare_net=FalseprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1e82317cab6940218524dae7340fd4c8', '-D', '/var/lib/mock/827452-epel-7-x86_64-1542810727.406162/root', '-a', '--capability=cap_ipc_lock', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 BUILDSTDERR: warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/pymol-1.7.1-1.20140519svn4076.el7.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'], chrootPath='/var/lib/mock/827452-epel-7-x86_64-1542810727.406162/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock']unshare_net=FalseprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0ee18085f7634ea08283d3badd46a3d8', '-D', '/var/lib/mock/827452-epel-7-x86_64-1542810727.406162/root', '-a', '--capability=cap_ipc_lock', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/pymol.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 BUILDSTDERR: warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0NXsNC + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pymol-1.7.1 + /usr/bin/xz -dc /builddir/build/SOURCES/pymol-1.7.1-20140519svn4076.tar.xz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd pymol-1.7.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (pymol-setup.py.patch): + echo 'Patch #0 (pymol-setup.py.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/pymol-setup.py.patch patching file setup.py Patch #1 (pymol-init.py.patch): + echo 'Patch #1 (pymol-init.py.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/pymol-init.py.patch patching file modules/pymol/__init__.py Hunk #1 succeeded at 143 (offset 1 line). Patch #2 (pymol-maeffplugin.cpp.patch): + echo 'Patch #2 (pymol-maeffplugin.cpp.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/pymol-maeffplugin.cpp.patch patching file contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp + mv modules/web modules/pymol_web + sed -i 1d modules/pmg_tk/startup/apbs_tools.py + chmod 644 data/xray/atomformfactor2.dat data/xray/atomformfactor5.dat data/xray/spgbase.dat + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6IXJDU + umask 022 + cd /builddir/build/BUILD + cd pymol-1.7.1 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + /usr/bin/python -c 'import setuptools; execfile("setup.py")' build numpy not available running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/pymol_web creating build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pymol_web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pymol_web/examples/__init__.py -> build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/make_cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol_web/__init__.py -> build/lib.linux-x86_64-2.7/pymol_web copying modules/pymol_web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/pymol_web creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Matrix.c -o build/temp.linux-x86_64-2.7/layer0/Matrix.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o BUILDSTDERR: layer0/Matrix.c: In function 'MatrixFitRMSTTTf': BUILDSTDERR: layer0/Matrix.c:1180:18: warning: variable 'ix' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int iters, ix, iy, iz, unchanged = 0; BUILDSTDERR: ^ BUILDSTDERR: ov/src/OVLexicon.c: In function 'OVLexicon_BorrowFromCString': BUILDSTDERR: ov/src/OVLexicon.c:360:11: warning: variable 'cur_index' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ov_word cur_index = 0; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/ov_utility.c -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeap.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVRandom.c -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVContext.c -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o BUILDSTDERR: ov/src/OVContext.c: In function 'OVContext_Del': BUILDSTDERR: ov/src/OVContext.c:21:13: warning: variable 'heap' set but not used [-Wunused-but-set-variable] BUILDSTDERR: OVHeap *heap = I->heap; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Word.c -o build/temp.linux-x86_64-2.7/layer0/Word.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Deferred.c -o build/temp.linux-x86_64-2.7/layer0/Deferred.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Feedback.c -o build/temp.linux-x86_64-2.7/layer0/Feedback.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Raw.c -o build/temp.linux-x86_64-2.7/layer0/Raw.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Parse.c -o build/temp.linux-x86_64-2.7/layer0/Parse.o BUILDSTDERR: layer0/Parse.c: In function 'ParseFloat3List': BUILDSTDERR: layer0/Parse.c:173:7: warning: array subscript has type 'char' [-Wchar-subscripts] BUILDSTDERR: buf[blen] = 0; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Block.c -o build/temp.linux-x86_64-2.7/layer0/Block.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Map.c -o build/temp.linux-x86_64-2.7/layer0/Map.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryCache.c -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Texture.c -o build/temp.linux-x86_64-2.7/layer0/Texture.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/os_gl.c -o build/temp.linux-x86_64-2.7/layer0/os_gl.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Triangle.c -o build/temp.linux-x86_64-2.7/layer0/Triangle.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Field.c -o build/temp.linux-x86_64-2.7/layer0/Field.o BUILDSTDERR: layer0/Triangle.c: In function 'TriangleBuildLast': BUILDSTDERR: layer0/Triangle.c:1511:7: warning: variable 'both_active' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int both_active; BUILDSTDERR: ^ BUILDSTDERR: layer0/Field.c: In function 'FieldNewFromPyList': BUILDSTDERR: layer0/Field.c:126:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer0/Field.c:125:16: warning: variable 'n_elem' set but not used [-Wunused-but-set-variable] BUILDSTDERR: unsigned int n_elem; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Queue.c -o build/temp.linux-x86_64-2.7/layer0/Queue.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Sphere.c -o build/temp.linux-x86_64-2.7/layer0/Sphere.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MyPNG.c -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer1/Setting.h:20, BUILDSTDERR: from layer0/MyPNG.c:56: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _POSIX_C_SOURCE 200112L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/MyPNG.c:16: BUILDSTDERR: /usr/include/features.h:168:0: note: this is the location of the previous definition BUILDSTDERR: # define _POSIX_C_SOURCE 200809L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer1/Setting.h:20, BUILDSTDERR: from layer0/MyPNG.c:56: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _XOPEN_SOURCE 600 BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/MyPNG.c:16: BUILDSTDERR: /usr/include/features.h:170:0: note: this is the location of the previous definition BUILDSTDERR: # define _XOPEN_SOURCE 700 BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tracker.c -o build/temp.linux-x86_64-2.7/layer0/Tracker.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Pixmap.c -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Util.c -o build/temp.linux-x86_64-2.7/layer0/Util.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Crystal.c -o build/temp.linux-x86_64-2.7/layer0/Crystal.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Debug.c -o build/temp.linux-x86_64-2.7/layer0/Debug.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Basis.c -o build/temp.linux-x86_64-2.7/layer1/Basis.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/CGO.c -o build/temp.linux-x86_64-2.7/layer1/CGO.o BUILDSTDERR: layer1/CGO.c: In function 'CGONewFromPyList': BUILDSTDERR: layer1/CGO.c:329:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOFromFloatArray': BUILDSTDERR: layer1/CGO.c:530:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int c; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOCombineBeginEnd': BUILDSTDERR: layer1/CGO.c:1935:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] BUILDSTDERR: uchar *pickColorValsUC; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:1881:6: warning: unused variable 'ncolors' [-Wunused-variable] BUILDSTDERR: int ncolors = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOCountNumVerticesForScreen': BUILDSTDERR: layer1/CGO.c:2313:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while(op = (CGO_MASK & CGO_read_int(pc))) { BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'OptimizePointsToVBO': BUILDSTDERR: layer1/CGO.c:2642:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2645:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2649:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2671:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/ShaderMgr.c -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o BUILDSTDERR: layer1/CGO.c:2682:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2688:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2699:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2450:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short err = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOProcessCGOtoArrays': BUILDSTDERR: layer1/CGO.c:2730:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short err = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOProcessScreenCGOtoArrays': BUILDSTDERR: layer1/CGO.c:3012:8: warning: variable 'has_texcoord' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short has_texcoord = false; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2966:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short err = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeToVBONotIndexedWithReturnedData': BUILDSTDERR: layer1/CGO.c:3220:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3224:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3232:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3236:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3248:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3252:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3264:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3268:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3275:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3505:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3509:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3517:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3521:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3533:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3537:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3549:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3141:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short err = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeToVBOIndexedWithColorImpl': BUILDSTDERR: layer1/CGO.c:3890:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3893:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3905:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3909:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3921:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3925:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3937:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3941:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3949:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3953:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3960:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4200:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4203:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4207:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4215:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4219:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4231:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4235:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4247:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4251:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4259:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3631:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short err = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeGLSLCylindersToVBOIndexedImpl': BUILDSTDERR: layer1/CGO.c:4621:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4624:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4628:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4661:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4667:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4671:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeSpheresToVBONonIndexedImpl': BUILDSTDERR: layer1/CGO.c:4932:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4935:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4939:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:4963:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOSimplify': BUILDSTDERR: layer1/CGO.c:5171:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] BUILDSTDERR: uchar *pickColorValsUC; BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer0/ShaderMgr.c:18: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _POSIX_C_SOURCE 200112L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/os_gl_pre.h:4, BUILDSTDERR: from layer0/os_gl.h:4, BUILDSTDERR: from layer0/ShaderMgr.c:17: BUILDSTDERR: /usr/include/features.h:168:0: note: this is the location of the previous definition BUILDSTDERR: # define _POSIX_C_SOURCE 200809L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer0/ShaderMgr.c:18: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _XOPEN_SOURCE 600 BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/os_gl_pre.h:4, BUILDSTDERR: from layer0/os_gl.h:4, BUILDSTDERR: from layer0/ShaderMgr.c:17: BUILDSTDERR: /usr/include/features.h:170:0: note: this is the location of the previous definition BUILDSTDERR: # define _XOPEN_SOURCE 700 BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeTextures': BUILDSTDERR: layer1/CGO.c:5385:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5389:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5392:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5400:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5405:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5412:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5416:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5423:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n") BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeLabels': BUILDSTDERR: layer1/CGO.c:5582:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() BEFORE glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5586:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5589:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5597:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5602:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5609:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5613:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5620:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n") BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5624:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:5631:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n") BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOExpandDrawTextures': BUILDSTDERR: layer1/CGO.c:5679:30: warning: variable 'onvals' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int nvals = narrays*nverts, onvals; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGORenderRay': BUILDSTDERR: layer1/CGO.c:6220:42: warning: variable 'pickColorVals' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *normalVals = 0, *colorVals = 0, *pickColorVals; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_buffers_indexed': BUILDSTDERR: layer1/CGO.c:6662:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("beginning of CGO_gl_draw_buffers_indexed returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:6788:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: before glDrawElements returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:6790:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: after glDrawElements returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:6835:1: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: end returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_label': BUILDSTDERR: layer1/CGO.c:7136:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderPrg_ReplaceStringsInPlace': BUILDSTDERR: layer0/ShaderMgr.c:161:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while(rstr=strstr(dest_line, replaceStrings[i])){ BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7136:36: warning: variable 'screenMax' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7136:22: warning: variable 'screenMin' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_texture': BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderMgr_Reload_Shader_Variables': BUILDSTDERR: layer0/ShaderMgr.c:401:7: warning: variable 'bg_image_mode_solid' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int bg_image_mode_solid; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7177:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderPrg_BindAttribLocations': BUILDSTDERR: layer0/ShaderMgr.c:509:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:513:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:517:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderPrg_BindLabelAttribLocations': BUILDSTDERR: layer0/ShaderMgr.c:528:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:535:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderPrg_BindCylinderAttribLocations': BUILDSTDERR: layer0/ShaderMgr.c:549:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:553:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:557:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:561:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderPrg_Reload': BUILDSTDERR: layer0/ShaderMgr.c:700:24: warning: unused variable 'needAttach' [-Wunused-variable] BUILDSTDERR: int status, howLong, needAttach = 0; BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'ShaderMgrConfig': BUILDSTDERR: layer0/ShaderMgr.c:836:14: warning: unused variable 'err' [-Wunused-variable] BUILDSTDERR: GLenum err ; BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:885:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (err = glGetError()){ BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7177:36: warning: variable 'screenMax' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7177:22: warning: variable 'screenMin' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; BUILDSTDERR: ^ BUILDSTDERR: layer0/ShaderMgr.c: In function 'CShaderPrg_Enable_CylinderShader': BUILDSTDERR: layer0/ShaderMgr.c:1882:10: warning: variable 'm' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *m; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGORenderGLPicking': BUILDSTDERR: layer1/CGO.c:7697:73: warning: variable 'pbnd' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7697:57: warning: variable 'pidx' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOSimpleCone': BUILDSTDERR: layer1/CGO.c:8765:15: warning: variable 'nub2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float nub1, nub2; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:8765:9: warning: variable 'nub1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float nub1, nub2; BUILDSTDERR: ^ BUILDSTDERR: In file included from layer1/CGO.c:24:0: BUILDSTDERR: layer1/CGO.c: In function 'CGOGetSizeWithoutStops': BUILDSTDERR: layer1/CGO.h:35:26: warning: value computed is not used [-Wunused-value] BUILDSTDERR: #define CGO_read_int(p) (*((int*)((p)++))) BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9045:5: note: in expansion of macro 'CGO_read_int' BUILDSTDERR: CGO_read_int(pc); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOChangeShadersTo': BUILDSTDERR: layer1/CGO.c:9567:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while(op = (CGO_MASK & CGO_read_int(pc))) { BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeScreenTexturesAndPolygons': BUILDSTDERR: layer1/CGO.c:9685:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9689:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9697:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9701:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9709:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9713:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:9724:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_label': BUILDSTDERR: layer1/CGO.c:7160:15: warning: 'buf1' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: glBindBuffer(GL_ARRAY_BUFFER, buf1); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7162:15: warning: 'buf2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: glBindBuffer(GL_ARRAY_BUFFER, buf2); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_texture': BUILDSTDERR: layer1/CGO.c:7201:15: warning: 'buf1' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: glBindBuffer(GL_ARRAY_BUFFER, buf1); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7203:15: warning: 'buf2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: glBindBuffer(GL_ARRAY_BUFFER, buf2); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_buffers': BUILDSTDERR: layer1/CGO.c:6649:23: warning: 'shaderPrg' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: CShaderPrg_Disable(shaderPrg); BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGO_gl_draw_arrays': BUILDSTDERR: layer1/CGO.c:6558:13: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: glVertex3fv(&vertexVals[pla]); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Err.c -o build/temp.linux-x86_64-2.7/layer0/Err.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Isosurf.c -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o BUILDSTDERR: layer0/Isosurf.c: In function 'IsosurfNewFromPyList': BUILDSTDERR: layer0/Isosurf.c:168:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer0/Isosurf.c: In function 'IsofieldGetCorners': BUILDSTDERR: layer0/Isosurf.c:2211:1: warning: control reaches end of non-void function [-Wreturn-type] BUILDSTDERR: } BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOCombineBeginEnd': BUILDSTDERR: layer1/CGO.c:1998:13: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'OptimizePointsToVBO': BUILDSTDERR: layer1/CGO.c:2607:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOProcessCGOtoArrays': BUILDSTDERR: layer1/CGO.c:2887:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:2887:29: warning: 'accessibilityValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: layer1/CGO.c:2887:29: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeToVBONotIndexedWithReturnedData': BUILDSTDERR: layer1/CGO.c:3429:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:3429:29: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Match.c -o build/temp.linux-x86_64-2.7/layer0/Match.o BUILDSTDERR: layer1/CGO.c: In function 'CGOSimplify': BUILDSTDERR: layer1/CGO.c:5213:13: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tetsurf.c -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o BUILDSTDERR: layer1/CGO.c: In function 'CGORenderRay': BUILDSTDERR: layer1/CGO.c:6244:9: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: v0 = &vertexVals[pl]; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGORenderGLPicking': BUILDSTDERR: layer1/CGO.c:7775:20: warning: 'pca' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: pickColorVals = pca + nverts; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c:7775:26: warning: 'nverts' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: pickColorVals = pca + nverts; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGORenderGL': BUILDSTDERR: layer1/CGO.c:8085:12: warning: 'normalVals_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: n2 = normalVals_tmp + 3; BUILDSTDERR: ^ BUILDSTDERR: layer1/CGO.c: In function 'CGOOptimizeGLSLCylindersToVBOIndexedImpl': BUILDSTDERR: layer1/CGO.c:4642:15: warning: 'org_colorVals' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: glBufferData(GL_ARRAY_BUFFER, sizeof(float)*total_vert*4, org_colorVals, GL_STATIC_DRAW); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Setting.c -o build/temp.linux-x86_64-2.7/layer1/Setting.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Vector.c -o build/temp.linux-x86_64-2.7/layer0/Vector.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/P.c -o build/temp.linux-x86_64-2.7/layer1/P.o BUILDSTDERR: layer1/P.c: In function 'PLabelExprUsesVariable': BUILDSTDERR: layer1/P.c:191:17: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] BUILDSTDERR: OrthoLineType buffer; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PLabelAtomAlt': BUILDSTDERR: layer1/P.c:343:8: warning: the address of 'tok' will always evaluate as 'true' [-Waddress] BUILDSTDERR: if (tok && tok[0]){ BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PAlterAtomState': BUILDSTDERR: layer1/P.c:824:59: warning: variable 'z_id1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c:824:36: warning: variable 'y_id1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c:824:13: warning: variable 'x_id1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PUnlockAPIAsGlut': BUILDSTDERR: layer1/P.c:1468:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PUnlockAPIAsGlutNoFlush': BUILDSTDERR: layer1/P.c:1482:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PLockAPIAsGlut': BUILDSTDERR: layer1/P.c:1533:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c:1545:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c:1563:7: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PFlush': BUILDSTDERR: layer1/P.c:2635:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while(size = OrthoCommandOutSize(G)){ BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PFlushFast': BUILDSTDERR: layer1/P.c:2679:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while(size = OrthoCommandOutSize(G)){ BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c:2693:7: warning: format '%x' expects argument of type 'unsigned int', but argument 4 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PAutoBlock': BUILDSTDERR: layer1/P.c:2789:9: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: SavedThread[MAX_SAVED_THREAD - 2].id, SavedThread[MAX_SAVED_THREAD - 3].id ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c:2798:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer1/P.c: In function 'PUnblock': BUILDSTDERR: layer1/P.c:2818:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Color.c -o build/temp.linux-x86_64-2.7/layer1/Color.o BUILDSTDERR: layer1/Color.c: In function 'ColorExtFromPyList': BUILDSTDERR: layer1/Color.c:406:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer1/Color.c: In function 'ColorDef': BUILDSTDERR: layer1/Color.c:576:7: warning: variable 'best' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int best; BUILDSTDERR: ^ BUILDSTDERR: layer1/Color.c: In function 'Color3fToInt': BUILDSTDERR: layer1/Color.c:3069:16: warning: unused variable 'result' [-Wunused-variable] BUILDSTDERR: unsigned int result; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Wizard.c -o build/temp.linux-x86_64-2.7/layer1/Wizard.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Movie.c -o build/temp.linux-x86_64-2.7/layer1/Movie.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Extrude.c -o build/temp.linux-x86_64-2.7/layer1/Extrude.o BUILDSTDERR: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceVariableTube': BUILDSTDERR: layer1/Extrude.c:1124:14: warning: variable 'stop' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int start, stop; BUILDSTDERR: ^ BUILDSTDERR: layer1/Extrude.c:1124:7: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int start, stop; BUILDSTDERR: ^ BUILDSTDERR: In file included from layer0/OOMac.h:21:0, BUILDSTDERR: from layer1/Extrude.c:25: BUILDSTDERR: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceTube': BUILDSTDERR: layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define CHECKOK(ok, var) ok &= var ? true : false; BUILDSTDERR: ^ BUILDSTDERR: layer1/Extrude.c:690:47: note: 'TN' was declared here BUILDSTDERR: float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Seq.c -o build/temp.linux-x86_64-2.7/layer1/Seq.o BUILDSTDERR: In file included from layer0/OOMac.h:21:0, BUILDSTDERR: from layer1/Extrude.c:25: BUILDSTDERR: layer1/Extrude.c: In function 'ExtrudeCGOSurfacePolygon': BUILDSTDERR: layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define CHECKOK(ok, var) ok &= var ? true : false; BUILDSTDERR: ^ BUILDSTDERR: layer1/Extrude.c:1390:47: note: 'TN' was declared here BUILDSTDERR: float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; BUILDSTDERR: ^ BUILDSTDERR: layer1/Seq.c: In function 'SeqDrag': BUILDSTDERR: layer1/Seq.c:182:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] BUILDSTDERR: CSeqCol *col; BUILDSTDERR: ^ BUILDSTDERR: layer1/Seq.c: In function 'SeqRelease': BUILDSTDERR: layer1/Seq.c:213:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] BUILDSTDERR: CSeqCol *col; BUILDSTDERR: ^ BUILDSTDERR: layer1/Seq.c: In function 'SeqClick': BUILDSTDERR: layer1/Seq.c:267:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] BUILDSTDERR: CSeqCol *col; BUILDSTDERR: ^ BUILDSTDERR: In file included from layer0/OOMac.h:21:0, BUILDSTDERR: from layer1/Extrude.c:25: BUILDSTDERR: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceStrand': BUILDSTDERR: layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define CHECKOK(ok, var) ok &= var ? true : false; BUILDSTDERR: ^ BUILDSTDERR: layer1/Extrude.c:1708:47: note: 'TN' was declared here BUILDSTDERR: float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ortho.c -o build/temp.linux-x86_64-2.7/layer1/Ortho.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ButMode.c -o build/temp.linux-x86_64-2.7/layer1/ButMode.o BUILDSTDERR: layer1/Ortho.c: In function 'OrthoDoDraw': BUILDSTDERR: layer1/Ortho.c:1520:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *v; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ortho.c: In function 'bg_grad': BUILDSTDERR: layer1/Ortho.c:1430:14: warning: 'cgo2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: CGOFree(cgo2); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/TypeFace.c -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontType.c -o build/temp.linux-x86_64-2.7/layer1/FontType.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ray.c -o build/temp.linux-x86_64-2.7/layer1/Ray.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/View.c -o build/temp.linux-x86_64-2.7/layer1/View.o BUILDSTDERR: In file included from layer1/Ray.c:44:0: BUILDSTDERR: layer1/Basis.c: In function 'ConeLineToSphereCapped': BUILDSTDERR: layer1/Basis.c:846:11: warning: variable 'base2orig_len' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float base2orig_len, base2orig_len_sq; BUILDSTDERR: ^ BUILDSTDERR: layer1/Basis.c: In function 'BasisHitShadow': BUILDSTDERR: layer1/Basis.c:2361:7: warning: variable 'check_interior_flag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int check_interior_flag; BUILDSTDERR: ^ BUILDSTDERR: layer1/Basis.c:2360:7: warning: variable 'excl_trans_flag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int excl_trans_flag; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c: In function 'RayRenderG3d': BUILDSTDERR: layer1/Ray.c:967:36: warning: variable 'scale_z' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register float scale_x, scale_y, scale_z; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c: In function 'RayRenderIDTF': BUILDSTDERR: layer1/Ray.c:2132:11: warning: variable 'mesh_start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int mesh_start = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c: In function 'RayRenderPOV': BUILDSTDERR: layer1/Ray.c:2445:28: warning: variable 'bkrd_bottom' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *bkrd, *bkrd_top, *bkrd_bottom; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c:2445:17: warning: variable 'bkrd_top' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *bkrd, *bkrd_top, *bkrd_bottom; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c:2443:7: warning: variable 'fogRangeFlag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int fogRangeFlag = false; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c:2442:7: warning: variable 'fogFlag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int fogFlag = false; BUILDSTDERR: ^ BUILDSTDERR: layer1/Ray.c: In function 'RayRender': BUILDSTDERR: layer1/Ray.c:6119:15: warning: variable 'dc' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int dc = 0; BUILDSTDERR: ^ BUILDSTDERR: layer1/View.c: In function 'matrix_interpolate': BUILDSTDERR: layer1/View.c:657:23: warning: variable 'center' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float p0[3], p1[3], center[3]; BUILDSTDERR: ^ BUILDSTDERR: layer1/View.c:657:16: warning: variable 'p1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float p0[3], p1[3], center[3]; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Shaker.c -o build/temp.linux-x86_64-2.7/layer1/Shaker.o BUILDSTDERR: layer1/Shaker.c: In function 'ShakerGetPyra': BUILDSTDERR: layer1/Shaker.c:73:16: warning: variable 't0' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float av[3], t0[3]; BUILDSTDERR: ^ BUILDSTDERR: layer1/Shaker.c: In function 'ShakerDoPyra': BUILDSTDERR: layer1/Shaker.c:94:16: warning: variable 't0' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float av[3], t0[3], push[3]; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PConv.c -o build/temp.linux-x86_64-2.7/layer1/PConv.o BUILDSTDERR: In file included from layer1/Ray.c:24:0: BUILDSTDERR: layer1/Basis.c: In function 'BasisMakeMap': BUILDSTDERR: layer0/Err.h:29:43: warning: 'tempRef' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define CHECKOK(ok, var) ok &= var ? true : false; BUILDSTDERR: ^ BUILDSTDERR: In file included from layer1/Ray.c:44:0: BUILDSTDERR: layer1/Basis.c:2871:17: note: 'tempRef' was declared here BUILDSTDERR: register int *tempRef; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Rep.c -o build/temp.linux-x86_64-2.7/layer1/Rep.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o BUILDSTDERR: layer1/PyMOLObject.c: In function 'ObjectMotion': BUILDSTDERR: layer1/PyMOLObject.c:383:13: warning: variable 'zero_flag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int zero_flag = -1; BUILDSTDERR: ^ BUILDSTDERR: layer1/PyMOLObject.c: In function 'ObjectStateFromPyList': BUILDSTDERR: layer1/PyMOLObject.c:1468:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll = 0; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Symmetry.c -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Character.c -o build/temp.linux-x86_64-2.7/layer1/Character.o BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer1/Setting.h:20, BUILDSTDERR: from layer1/CGO.h:22, BUILDSTDERR: from layer1/Character.c:29: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _POSIX_C_SOURCE 200112L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/os_gl_pre.h:4, BUILDSTDERR: from layer0/os_gl.h:4, BUILDSTDERR: from layer1/Character.c:18: BUILDSTDERR: /usr/include/features.h:168:0: note: this is the location of the previous definition BUILDSTDERR: # define _POSIX_C_SOURCE 200809L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer1/Setting.h:20, BUILDSTDERR: from layer1/CGO.h:22, BUILDSTDERR: from layer1/Character.c:29: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _XOPEN_SOURCE 600 BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/os_gl_pre.h:4, BUILDSTDERR: from layer0/os_gl.h:4, BUILDSTDERR: from layer1/Character.c:18: BUILDSTDERR: /usr/include/features.h:170:0: note: this is the location of the previous definition BUILDSTDERR: # define _XOPEN_SOURCE 700 BUILDSTDERR: ^ BUILDSTDERR: layer1/Character.c: In function 'CharacterRenderOpenGL': BUILDSTDERR: layer1/Character.c:273:18: warning: unused variable 'texVals' [-Wunused-variable] BUILDSTDERR: const GLfloat texVals [] = { BUILDSTDERR: ^ BUILDSTDERR: layer1/Character.c:267:18: warning: unused variable 'vertexVals' [-Wunused-variable] BUILDSTDERR: const GLfloat vertexVals [] = { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Scene.c -o build/temp.linux-x86_64-2.7/layer1/Scene.o BUILDSTDERR: layer1/Ray.c: In function 'RayTraceThread': BUILDSTDERR: layer1/Ray.c:3483:25: warning: 'back_mask' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: bkrd_value = back_mask | BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c: In function 'SceneDrawImageOverlay': BUILDSTDERR: layer1/Scene.c:3346:20: warning: variable 'color_word' set but not used [-Wunused-but-set-variable] BUILDSTDERR: unsigned int color_word; BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c: In function 'SceneReadTriplets': BUILDSTDERR: layer1/Scene.c:3569:7: warning: variable 'dim' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int dim[3]; BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c: In function 'SceneDrag': BUILDSTDERR: layer1/Scene.c:5955:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int result, which_light; BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c:6003:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int result, which_light; BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c: In function 'SceneReshape': BUILDSTDERR: layer1/Scene.c:6379:7: warning: variable 'y' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int y = height; BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c: In function 'SceneApplyImageGamma': BUILDSTDERR: layer1/Scene.c:6536:7: warning: variable 'big_endian' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int big_endian; BUILDSTDERR: ^ BUILDSTDERR: layer1/Scene.c: In function 'SceneRay': BUILDSTDERR: layer1/Scene.c:6764:7: warning: variable 'curState' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int curState; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Pop.c -o build/temp.linux-x86_64-2.7/layer1/Pop.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectVolume.c -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o BUILDSTDERR: layer2/ObjectVolume.c: In function 'ObjectVolumeNewFromPyList': BUILDSTDERR: layer2/ObjectVolume.c:270:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectVolume.c: In function 'ObjectVolumeUpdate': BUILDSTDERR: layer2/ObjectVolume.c:443:50: warning: statement with no effect [-Wunused-value] BUILDSTDERR: a, vs->RefreshFlag, vs->ResurfaceFlag ENDFD(G); BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectVolume.c:466:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) { BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectVolume.c:507:26: warning: variable 'max_ext' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *min_ext, *max_ext; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectVolume.c:507:16: warning: variable 'min_ext' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *min_ext, *max_ext; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectVolume.c: In function 'ObjectVolumeRender': BUILDSTDERR: layer2/ObjectVolume.c:899:89: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCGO.c -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCylBond.c -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o BUILDSTDERR: layer2/RepCylBond.c: In function 'RepCylBondPopulateAdjacentAtoms': BUILDSTDERR: layer2/RepCylBond.c:1381:25: warning: variable 'h_scale' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float radius, transp, h_scale; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCylBond.c:1381:17: warning: variable 'transp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float radius, transp, h_scale; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCylBond.c:1381:9: warning: variable 'radius' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float radius, transp, h_scale; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCylBond.c:1378:10: warning: variable 'ord' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int a, ord, a1, a2, stick_color, c1, c2, s1, s2, half_bonds, hide_long = false; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCylBond.c: In function 'RepCylBondNew': BUILDSTDERR: layer2/RepCylBond.c:1541:16: warning: variable 'v_size' set but not used [-Wunused-but-set-variable] BUILDSTDERR: unsigned int v_size, vr_size; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCylBond.c:1534:7: warning: variable 'stick_round_nub' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int stick_round_nub; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCylBond.c: At top level: BUILDSTDERR: layer2/RepCylBond.c:2361:13: warning: 'subdivide' defined but not used [-Wunused-function] BUILDSTDERR: static void subdivide(int n, float *x, float *y) BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Font.c -o build/temp.linux-x86_64-2.7/layer1/Font.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Control.c -o build/temp.linux-x86_64-2.7/layer1/Control.o BUILDSTDERR: layer1/Control.c: In function 'ControlDrag': BUILDSTDERR: layer1/Control.c:251:7: warning: variable 'width' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int width; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ScrollBar.c -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer1/Setting.h:20, BUILDSTDERR: from layer1/CGO.h:22, BUILDSTDERR: from layer1/ScrollBar.c:23: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _POSIX_C_SOURCE 200112L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/os_gl_pre.h:4, BUILDSTDERR: from layer0/os_gl.h:4, BUILDSTDERR: from layer1/ScrollBar.c:17: BUILDSTDERR: /usr/include/features.h:168:0: note: this is the location of the previous definition BUILDSTDERR: # define _POSIX_C_SOURCE 200809L BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/python2.7/pyconfig.h:6:0, BUILDSTDERR: from /usr/include/python2.7/Python.h:8, BUILDSTDERR: from layer0/os_python.h:28, BUILDSTDERR: from layer1/Setting.h:20, BUILDSTDERR: from layer1/CGO.h:22, BUILDSTDERR: from layer1/ScrollBar.c:23: BUILDSTDERR: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] BUILDSTDERR: #define _XOPEN_SOURCE 600 BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/malloc.h:23:0, BUILDSTDERR: from layer0/os_predef.h:106, BUILDSTDERR: from layer0/os_gl_pre.h:4, BUILDSTDERR: from layer0/os_gl.h:4, BUILDSTDERR: from layer1/ScrollBar.c:17: BUILDSTDERR: /usr/include/features.h:170:0: note: this is the location of the previous definition BUILDSTDERR: # define _XOPEN_SOURCE 700 BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Text.c -o build/temp.linux-x86_64-2.7/layer1/Text.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/AtomInfo.c -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/DistSet.c -o build/temp.linux-x86_64-2.7/layer2/DistSet.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSurface.c -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o BUILDSTDERR: layer2/ObjectSurface.c: In function 'ObjectSurfaceUpdate': BUILDSTDERR: layer2/ObjectSurface.c:498:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDihedral.c -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o BUILDSTDERR: layer2/RepDihedral.c: In function 'RepDihedralNew': BUILDSTDERR: layer2/RepDihedral.c:527:15: warning: variable 'mod_pos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float mod_pos; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepDihedral.c:383:37: warning: variable 'v6' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *v1, *v2, *v3, *v4, *v5, *v6; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSlice.c -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o BUILDSTDERR: layer2/ObjectSlice.c: In function 'ObjectSliceStateFromPyList': BUILDSTDERR: layer2/ObjectSlice.c:103:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectSlice.c: In function 'ObjectSliceNewFromPyList': BUILDSTDERR: layer2/ObjectSlice.c:172:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectSlice.c: In function 'ObjectSliceUpdate': BUILDSTDERR: layer2/ObjectSlice.c:709:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectSlice.c: In function 'GenerateOutlineOfSlice': BUILDSTDERR: layer2/ObjectSlice.c:1120:14: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: CGOSphere(cgo, origin, 1.f); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepLabel.c -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSphere.c -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o BUILDSTDERR: layer2/RepSphere.c: In function 'RenderSphereMode_Direct': BUILDSTDERR: layer2/RepSphere.c:900:13: warning: variable 'last_vdw' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float last_vdw = -1.0F; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSphere.c: In function 'RepSphereComputeSphereNormals': BUILDSTDERR: layer2/RepSphere.c:2479:15: warning: variable 'nbr_flag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int nbr_flag; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSphere.c: In function 'RepSphereNew': BUILDSTDERR: layer2/RepSphere.c:2832:17: warning: variable 'ai2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *ai2; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSphere.c: In function 'RepSphereRender': BUILDSTDERR: layer2/RepSphere.c:2306:29: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: RenderSphereMode_Points(G, I, info, radius, c); BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSphere.c:2312:24: warning: 'n_quad_verts' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: RenderSphereMode_9(G, I, info, n_quad_verts, &v, radius, c); BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSphere.c: In function 'RepSphereGenerateGeometryCullForSphere': BUILDSTDERR: layer2/RepSphere.c:2670:13: warning: 'v1[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: v1[0] += v0[0] + vdw * sp->dot[q1][0]; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/SculptCache.c -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o BUILDSTDERR: layer2/ObjectGadgetRamp.c: In function 'ObjectGadgetRampUpdateCGO': BUILDSTDERR: layer2/ObjectGadgetRamp.c:651:10: warning: variable 'p' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *p; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepMesh.c -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o BUILDSTDERR: layer2/RepMesh.c: In function 'RepMeshRender': BUILDSTDERR: layer2/RepMesh.c:314:27: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: axis[1] = v[1] - origin[1]; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCartoon.c -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o BUILDSTDERR: layer2/RepCartoon.c: In function 'do_ring': BUILDSTDERR: layer2/RepCartoon.c:282:7: warning: variable 'cartoon_color' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int cartoon_color; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c: In function 'nuc_acid': BUILDSTDERR: layer2/RepCartoon.c:1497:22: warning: variable 'v_n' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *v_o, *v_c, *v_n, t0[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c: In function 'GenerateRepCartoonCGO': BUILDSTDERR: layer2/RepCartoon.c:1662:31: warning: variable 'ring_finder_eff' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ring_mode, ring_finder, ring_finder_eff; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c: In function 'RepCartoonNew': BUILDSTDERR: layer2/RepCartoon.c:2889:9: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float alpha; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c:2876:7: warning: variable 'skip_to' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int skip_to; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c:2865:7: warning: variable 'highlight_color' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int highlight_color; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c:2861:7: warning: variable 'cartoon_debug' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int cartoon_debug; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepMesh.c: In function 'RepMeshNew': BUILDSTDERR: layer2/RepMesh.c:1176:23: warning: 'field' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: IsosurfFieldFree(G, field); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistDash.c -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o BUILDSTDERR: layer2/RepDistDash.c: In function 'RepDistDashNew': BUILDSTDERR: layer2/RepDistDash.c:351:29: warning: variable 'd1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *v, *v1, *v2, d[3], d1[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepCartoon.c: In function 'do_ring': BUILDSTDERR: layer2/RepCartoon.c:1288:27: warning: 'ai' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: color = ColorGet(G, AtomInfoGetColorWithElement(G, ai, "C")); /* NEED TO CHANGE TO CARBON COLOR */ BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o BUILDSTDERR: layer2/ObjectMolecule2.c: In function 'ObjectMoleculePDBStr2CoordSet': BUILDSTDERR: layer2/ObjectMolecule2.c:1674:7: warning: variable 'have_conect' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int have_conect = false; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule2.c:1673:7: warning: variable 'seen_conect' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int seen_conect = false; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule2.c: In function 'ObjectMoleculeNewFromPyList': BUILDSTDERR: layer2/ObjectMolecule2.c:3685:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbonded.c -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepWireBond.c -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/CoordSet.c -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o BUILDSTDERR: layer2/CoordSet.c: In function 'CoordSetAtomToChemPyAtom': BUILDSTDERR: layer2/CoordSet.c:1021:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepRibbon.c -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o BUILDSTDERR: In file included from layer0/OOMac.h:21:0, BUILDSTDERR: from layer2/ObjectMolecule2.c:26: BUILDSTDERR: layer2/ObjectMolecule2.c: In function 'ObjectMoleculeSort': BUILDSTDERR: layer0/Err.h:29:43: warning: 'dAtmToIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define CHECKOK(ok, var) ok &= var ? true : false; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule2.c:4311:8: note: 'dAtmToIdx' was declared here BUILDSTDERR: int *dAtmToIdx; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCallback.c -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.c -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.c -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o BUILDSTDERR: layer2/RepNonbondedSphere.c: In function 'RepNonbondedSphereRender': BUILDSTDERR: layer2/RepNonbondedSphere.c:197:25: warning: variable 'use_default_shader' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short use_shader, use_default_shader, use_sphere_shader, generate_shader_cgo = 0, use_display_lists = 0; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/VFont.c -o build/temp.linux-x86_64-2.7/layer2/VFont.o BUILDSTDERR: layer2/VFont.c: In function 'VFontIndent': BUILDSTDERR: layer2/VFont.c:145:10: warning: variable 'pc' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *pc; BUILDSTDERR: ^ BUILDSTDERR: layer2/VFont.c:144:9: warning: variable 'base' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float base[3], pen[3]; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectDist.c -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDot.c -o build/temp.linux-x86_64-2.7/layer2/RepDot.o BUILDSTDERR: layer2/ObjectDist.c: In function 'ObjectDistGetDistSetFromM4XBond': BUILDSTDERR: layer2/ObjectDist.c:187:25: warning: variable 'dist' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *vv0, *vv1, dist; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepDot.c: In function 'RepDotRender': BUILDSTDERR: layer2/RepDot.c:195:33: warning: "/*" within comment [-Wcomment] BUILDSTDERR: /* if(normals) /* NORMALS do not get set for points BUILDSTDERR: ^ BUILDSTDERR: layer2/RepDot.c:220:24: warning: 'tmpCGO' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: CGOFreeWithoutVBOs(tmpCGO); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSurface.c -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeFixSeleHydrogens': BUILDSTDERR: layer2/ObjectMolecule.c:686:13: warning: variable 'cs' set but not used [-Wunused-but-set-variable] BUILDSTDERR: CoordSet *cs; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadTRJFile': BUILDSTDERR: layer2/ObjectMolecule.c:841:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadPMOFile': BUILDSTDERR: layer2/ObjectMolecule.c:2810:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeRenderSele': BUILDSTDERR: layer2/ObjectMolecule.c:3245:51: warning: variable 'ai' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register AtomInfoType *atInfo = I->AtomInfo, *ai; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadXYZFile': BUILDSTDERR: layer2/ObjectMolecule.c:3836:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeAttach': BUILDSTDERR: layer2/ObjectMolecule.c:4432:10: warning: variable 'nn' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int n, nn; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeFindOpenValenceVector': BUILDSTDERR: layer2/ObjectMolecule.c:4655:22: warning: variable 'ai1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *ai, *ai1; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeCreateSpheroid': BUILDSTDERR: layer2/RepSurface.c: In function 'RepSurfaceRender': BUILDSTDERR: layer2/RepSurface.c:1960:11: warning: variable 'col' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *col; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c:2221:28: warning: variable 'col' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *col; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:4836:10: warning: variable 'spl' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *spl; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c: In function 'RepSurfaceColor': BUILDSTDERR: layer2/RepSurface.c:3714:22: warning: variable 'planew' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float d[3], *vn0, planew, v0mod[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c:3793:29: warning: variable 'planew' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float d[3], *vn0, pt[3], planew, v0mod[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c:3793:22: warning: variable 'pt' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float d[3], *vn0, pt[3], planew, v0mod[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeGuessValences': BUILDSTDERR: layer2/RepSurface.c:3949:36: warning: variable 'pai2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *pai = NULL, *pai2 = NULL; /* variables for color smoothing */ BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6305:29: warning: variable 'bnd2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int bnd2[5]; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6079:38: warning: variable 'c2_len' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float c1_len = 0.0F, c2_len = 0.0F; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6079:23: warning: variable 'c1_len' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float c1_len = 0.0F, c2_len = 0.0F; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6078:56: warning: variable 'c2_bd' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int c1_at = -1, c2_at = -1, c1_bd = 0, c2_bd = 0; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6078:45: warning: variable 'c1_bd' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int c1_at = -1, c2_at = -1, c1_bd = 0, c2_bd = 0; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6073:68: warning: variable 'o4_len' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float o1_len = 0.0F, o2_len = 0.0F, o3_len = 0.0F, o4_len = 0.0F; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:6073:53: warning: variable 'o3_len' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float o1_len = 0.0F, o2_len = 0.0F, o3_len = 0.0F, o4_len = 0.0F; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c: In function 'SolventDotNew': BUILDSTDERR: layer2/RepSurface.c:5687:7: warning: variable 'maxDot' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int maxDot = 0; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeMOL2SetFormalCharges': BUILDSTDERR: layer2/ObjectMolecule.c:8924:46: warning: variable 'n' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int at, fcharge = 0, isProtein = 0, k, n; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeMOL2Str2CoordSet': BUILDSTDERR: layer2/ObjectMolecule.c:9323:38: warning: variable 'resv_flag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int chain_flag, resn_flag, resv_flag; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeInvalidateAtomType': BUILDSTDERR: layer2/ObjectMolecule.c:12149:16: warning: variable 'a' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ai, atm, a; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c: In function 'SurfaceJobRun': BUILDSTDERR: layer2/RepSurface.c:4648:18: warning: 'solv_map' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: MapFree(solv_map); BUILDSTDERR: ^ BUILDSTDERR: In file included from layer2/ObjectMolecule.c:26:0: BUILDSTDERR: layer2/ObjectMolecule.c: In function 'compute_avg_ring_dot_cross_fn.constprop.5': BUILDSTDERR: layer0/Vector.h:283:36: warning: 'cp[0][0]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define copy3f(v1,v2) {(v2)[0]=(v1)[0]; (v2)[1]=(v1)[1]; (v2)[2]=(v1)[2];} BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:5813:27: note: 'cp' was declared here BUILDSTDERR: float d10[3], d21[3], cp[8][3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepSurface.c: In function 'RepSurfaceRender': BUILDSTDERR: layer2/RepSurface.c:3324:13: warning: 'simple' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: CGOFree(simple); BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadRSTFile': BUILDSTDERR: layer2/ObjectMolecule.c:1357:10: warning: 'buffer' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: mfree(buffer); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMap.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapStateTrim': BUILDSTDERR: layer2/ObjectMap.c:477:7: warning: variable 'max' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int max[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapStateInterpolate': BUILDSTDERR: layer2/ObjectMap.c:1107:10: warning: variable 'out' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *out; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapNewFromPyList': BUILDSTDERR: layer2/ObjectMap.c:1586:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapCCP4StrToMap': BUILDSTDERR: layer2/ObjectMap.c:2724:5: warning: implicit declaration of function 'UtilNCopy' [-Wimplicit-function-declaration] BUILDSTDERR: UtilNCopy(ms->Symmetry->SpaceGroup, space_group_numbers[ispg], WordLength); BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c:2467:14: warning: variable 'xref' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int cc[3], xref[3]; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapLoadCCP4': BUILDSTDERR: layer2/ObjectMap.c:4590:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapLoadPHI': BUILDSTDERR: layer2/ObjectMap.c:4761:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapLoadDXFile': BUILDSTDERR: layer2/ObjectMap.c:5116:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapLoadACNTFile': BUILDSTDERR: layer2/ObjectMap.c:5364:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMap.c: In function 'ObjectMapLoadFLDFile': BUILDSTDERR: layer2/ObjectMap.c:5417:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeMerge': BUILDSTDERR: layer2/ObjectMolecule.c:9948:16: warning: 'i2a' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cs->IdxToAtm = i2a; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c:9944:12: warning: 'nAt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: I->NAtom = nAt; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeAddSeleHydrogens': BUILDSTDERR: layer2/ObjectMolecule.c:4046:16: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(cs->fFree) BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/Sculpt.c -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o BUILDSTDERR: layer2/ObjectMolecule.c: In function 'ObjectMoleculeFillOpenValences': BUILDSTDERR: layer2/ObjectMolecule.c:4574:12: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(cs->fFree) BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistLabel.c -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepAngle.c -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o BUILDSTDERR: layer2/RepDistLabel.c: In function 'RepDistLabelNew': BUILDSTDERR: layer2/RepDistLabel.c:403:24: warning: variable 'v6' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *v4, *v5, *v6; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepDistLabel.c:403:19: warning: variable 'v5' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float *v4, *v5, *v6; BUILDSTDERR: ^ BUILDSTDERR: layer2/RepAngle.c: In function 'RepAngleNew': BUILDSTDERR: layer2/RepAngle.c:453:15: warning: variable 'mod_pos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float mod_pos; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/PyMOL.c -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.c -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o BUILDSTDERR: layer5/PyMOL.c: In function 'PyMOL_CmdGetNames': BUILDSTDERR: layer5/PyMOL.c:4590:15: warning: variable 'arg' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *res, *arg; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/GadgetSet.c -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o BUILDSTDERR: layer2/GadgetSet.c: In function 'GadgetSetFromPyList': BUILDSTDERR: layer2/GadgetSet.c:93:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer2/GadgetSet.c: In function 'GadgetSetRender': BUILDSTDERR: layer2/GadgetSet.c:303:13: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/GadgetSet.c:290:9: warning: variable 'use_shader' set but not used [-Wunused-but-set-variable] BUILDSTDERR: short use_shader; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadget.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o BUILDSTDERR: layer2/ObjectGadget.c: In function 'ObjectGadgetInitFromPyList': BUILDSTDERR: layer2/ObjectGadget.c:305:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGroup.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMesh.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o BUILDSTDERR: layer2/ObjectMesh.c: In function 'ObjectMeshNewFromPyList': BUILDSTDERR: layer2/ObjectMesh.c:231:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ll; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMesh.c: In function 'ObjectMeshUpdate': BUILDSTDERR: layer2/ObjectMesh.c:604:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer2/ObjectMesh.c: In function 'ObjectMeshRenderImpl': BUILDSTDERR: layer2/ObjectMesh.c:1123:58: warning: value computed is not used [-Wunused-value] BUILDSTDERR: for(; ok && (c = *(n++)); v += 3, vc && (vc += 3)) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Seeker.c -o build/temp.linux-x86_64-2.7/layer3/Seeker.o BUILDSTDERR: layer3/Seeker.c: In function 'SeekerRefresh': BUILDSTDERR: layer3/Seeker.c:505:22: warning: variable 'not_selected' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int not_selected; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/TestPyMOL.c -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o BUILDSTDERR: layer5/TestPyMOL.c: In function 'get_st': BUILDSTDERR: layer5/TestPyMOL.c:76:25: warning: variable 'p' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *result = NULL, *p; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/main.c -o build/temp.linux-x86_64-2.7/layer5/main.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Selector.c -o build/temp.linux-x86_64-2.7/layer3/Selector.o BUILDSTDERR: layer3/Selector.c: In function 'SelectorGetSpacialMapFromSeleCoord': BUILDSTDERR: layer3/Selector.c:1491:23: warning: variable 'ai' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *ai; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorAssignSS': BUILDSTDERR: layer3/Selector.c:2089:11: warning: variable 'c' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int c, i, h, k, l; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorGetPairIndices': BUILDSTDERR: layer3/Selector.c:3563:23: warning: variable 'ai2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *ai1, *ai2; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:3563:17: warning: variable 'ai1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *ai1, *ai2; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorMapMaskVDW': BUILDSTDERR: layer3/Selector.c:5356:11: warning: variable 'n2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int n1, n2; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorSelect0': BUILDSTDERR: layer3/Selector.c:8621:15: warning: variable 's' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int at, s; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:8667:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: b > 2 && b < 5 || BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:8669:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: b > 18 && b < 32 || BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:8670:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: b > 36 && b < 51 || BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:8671:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: b > 54 && b < 85 || BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorSelect1': BUILDSTDERR: layer3/Selector.c:9089:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int prevmodel; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:9151:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int prevmodel; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorLogic1': BUILDSTDERR: layer3/Selector.c:10324:21: warning: variable 'ai' set but not used [-Wunused-but-set-variable] BUILDSTDERR: AtomInfoType *ai; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c: In function 'SelectorEvaluate': BUILDSTDERR: layer3/Selector.c:10856:19: warning: variable 'cc2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *q, *cc1, *cc2; BUILDSTDERR: ^ BUILDSTDERR: layer3/Selector.c:10855:15: warning: variable 'opFlag2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int opFlag, opFlag2, maxLevel; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:41:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:37: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:41:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:48: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:40: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:47: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:39: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:652:19: warning: variable 'atomname' set but not used [-Wunused-but-set-variable] BUILDSTDERR: const char *atomname; BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:0, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: At top level: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function] BUILDSTDERR: static int fort_eat_recmark(FILE *ifp, int recmarklen) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function] BUILDSTDERR: static int fort_get_endian_reclen(int reclen, int word0, int word1, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function] BUILDSTDERR: static int fortread_4(void *dest, int n, int swap, FILE *fd) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:33:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx(const char *label) BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c: In function 'write_crd_timestep': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c:167:6: warning: 'lfdone' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (!lfdone) BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] BUILDSTDERR: static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:830:13: warning: 'eatline' defined but not used [-Wunused-function] BUILDSTDERR: static void eatline(FILE * fd, int n) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:841:13: warning: 'eatwhitelines' defined but not used [-Wunused-function] BUILDSTDERR: static void eatwhitelines(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: 'iswhiteline' defined but not used [-Wunused-function] BUILDSTDERR: static int iswhiteline(char *s) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: 'strtoupper' defined but not used [-Wunused-function] BUILDSTDERR: static char *strtoupper(char *s) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:957:12: warning: 'goto_keyline' defined but not used [-Wunused-function] BUILDSTDERR: static int goto_keyline(FILE *file, ...) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: 'have_keyline' defined but not used [-Wunused-function] BUILDSTDERR: static int have_keyline(FILE *file, const char *keystring1, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] BUILDSTDERR: static void thisline(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] BUILDSTDERR: static void whereami(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:433:18: warning: 'init_qmdata' defined but not used [-Wunused-function] BUILDSTDERR: static qmdata_t* init_qmdata(qmdata_t *data) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:466:27: warning: 'add_wavefunction' defined but not used [-Wunused-function] BUILDSTDERR: static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] BUILDSTDERR: static void replace_wavefunction(qm_timestep_t *ts, int n) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] BUILDSTDERR: static void del_wavefunction(qm_timestep_t *ts) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:535:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function] BUILDSTDERR: static void angular_momentum_expon(int *ang_mom_expon, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] BUILDSTDERR: static void print_matrix4(const float mat[16]) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] BUILDSTDERR: static int fpexpftoc(char *ftocstr) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:585:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] BUILDSTDERR: molfile_qm_hessian_t *hessian_data; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'get_basis': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] BUILDSTDERR: char s_expon[128], s_coeff1[128], s_coeff2[128]; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] BUILDSTDERR: char s_expon[128], s_coeff1[128], s_coeff2[128]; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] BUILDSTDERR: char s_expon[128], s_coeff1[128], s_coeff2[128]; BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:37:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: At top level: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] BUILDSTDERR: static const char *get_pte_label(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] BUILDSTDERR: static float get_pte_mass(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] BUILDSTDERR: static float get_pte_vdw_radius(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx(const char *label) BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] BUILDSTDERR: static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: 'have_keyline' defined but not used [-Wunused-function] BUILDSTDERR: static int have_keyline(FILE *file, const char *keystring1, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] BUILDSTDERR: static void thisline(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] BUILDSTDERR: static void whereami(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] BUILDSTDERR: static void replace_wavefunction(qm_timestep_t *ts, int n) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] BUILDSTDERR: static void del_wavefunction(qm_timestep_t *ts) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] BUILDSTDERR: static void print_matrix4(const float mat[16]) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(data->file, "%d", &natm); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:48:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_parse_atom': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:234:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[16]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%16s %n", &atom.name, &n) < 1) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:243:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[16]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%16s %n", &atom.type, &n) < 1) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:269:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[8]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%8s %n", &atom.resname, &n) < 1) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:284:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[8]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%8s %n", &atom.segid, &n) < 1) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:293:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%2s %n", &atom.insertion, &n) < 1) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:305:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%2s %n", &atom.chain, &n) < 1) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:339:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] BUILDSTDERR: if (sscanf(s, "%2s %n", &atom.altloc, &n) < 1) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(fbuffer, 1024, data->file); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1101:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char word[3][BUFSIZ]; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2258:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char word[7][BUFSIZ]; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3561:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char word[6][BUFSIZ]; BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: 'iswhiteline' defined but not used [-Wunused-function] BUILDSTDERR: static int iswhiteline(char *s) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: 'strtoupper' defined but not used [-Wunused-function] BUILDSTDERR: static char *strtoupper(char *s) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] BUILDSTDERR: static void thisline(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] BUILDSTDERR: static void whereami(FILE *file) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] BUILDSTDERR: static void print_matrix4(const float mat[16]) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] BUILDSTDERR: static int fpexpftoc(char *ftocstr) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] BUILDSTDERR: static const char *get_pte_label(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] BUILDSTDERR: static float get_pte_mass(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] BUILDSTDERR: static float get_pte_vdw_radius(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx(const char *label) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:997:13: warning: 'print_input_data' defined but not used [-Wunused-function] BUILDSTDERR: static void print_input_data(qmdata_t *data) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Executive.c -o build/temp.linux-x86_64-2.7/layer3/Executive.o BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveGetHistogram': BUILDSTDERR: layer3/Executive.c:4510:7: warning: too many arguments for format [-Wformat-extra-args] BUILDSTDERR: " GetHistogram-Error: wrong object type.", objName ENDFB(G); BUILDSTDERR: ^ BUILDSTDERR: In file included from layer0/OOMac.h:21:0, BUILDSTDERR: from layer3/Executive.c:24: BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveSetSymmetry': BUILDSTDERR: layer3/Executive.c:5913:19: warning: assignment makes integer from pointer without a cast [enabled by default] BUILDSTDERR: ok_assert(1, ok = symmetry); BUILDSTDERR: ^ BUILDSTDERR: layer0/Err.h:32:31: note: in definition of macro 'ok_assert' BUILDSTDERR: #define ok_assert(x, c) {if(!(c)) ok_raise(x);} BUILDSTDERR: ^ BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveMapSet': BUILDSTDERR: layer3/Executive.c:6561:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float tmp[3]; BUILDSTDERR: ^ BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveSculptIterate': BUILDSTDERR: layer3/Executive.c:7036:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveRemoveAtoms': BUILDSTDERR: layer3/Executive.c:9396:7: warning: variable 'flag' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int flag = false; BUILDSTDERR: ^ BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveIterateList': BUILDSTDERR: layer3/Executive.c:10713:14: warning: variable 'cs' set but not used [-Wunused-but-set-variable] BUILDSTDERR: CoordSet *cs = NULL; BUILDSTDERR: ^ BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveCenter': BUILDSTDERR: layer3/Executive.c:13702:23: warning: variable 'df' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float mn[3], mx[3], df[3]; BUILDSTDERR: ^ BUILDSTDERR: layer3/Executive.c: In function 'ExecutiveRelease': BUILDSTDERR: layer3/Executive.c:15740:7: warning: variable 'n' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int n; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] BUILDSTDERR: static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:65: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:41:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(magicchar,sizeof(char),4,fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&igarb,sizeof(int),1,fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *name, *type; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *name, *type; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:468:12: warning: 'fio_read_int32' defined but not used [-Wunused-function] BUILDSTDERR: static int fio_read_int32(fio_fd fd, int *i) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:472:12: warning: 'fio_write_str' defined but not used [-Wunused-function] BUILDSTDERR: static int fio_write_str(fio_fd fd, const char *str) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] BUILDSTDERR: static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:65: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:43:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double timesteprst; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(title, 82, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 82, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&filen, sizeof(namdbin_int32), 1, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: In function 'read_js_structure': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] BUILDSTDERR: fio_size_t bszmask; BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:0, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:87: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: At top level: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: 'hash_delete' defined but not used [-Wunused-function] BUILDSTDERR: VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: 'hash_stats' defined but not used [-Wunused-function] BUILDSTDERR: VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:88:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] BUILDSTDERR: int last_ctnumber = -1; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Editor.c -o build/temp.linux-x86_64-2.7/layer3/Editor.o BUILDSTDERR: layer3/Editor.c: In function 'EditorDrawDihedral': BUILDSTDERR: layer3/Editor.c:113:22: warning: variable 'sele3' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int sele0, sele3; BUILDSTDERR: ^ BUILDSTDERR: layer3/Editor.c:113:15: warning: variable 'sele0' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int sele0, sele3; BUILDSTDERR: ^ BUILDSTDERR: layer3/Editor.c: In function 'EditorAttach': BUILDSTDERR: layer3/Editor.c:934:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int state; BUILDSTDERR: ^ BUILDSTDERR: layer3/Editor.c: In function 'EditorReplace': BUILDSTDERR: layer3/Editor.c:1115:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int state; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/PlugIOManager.c -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o BUILDSTDERR: layer3/PlugIOManager.c: In function 'PlugIOManagerLoadTraj': BUILDSTDERR: layer3/PlugIOManager.c:232:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: if(stop > 0 && cnt >= stop || max > 0 && ncnt >= max) { BUILDSTDERR: ^ BUILDSTDERR: layer3/PlugIOManager.c: In function 'PlugIOManagerLoadVol': BUILDSTDERR: layer3/PlugIOManager.c:349:17: warning: variable 'isNew' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int isNew = false; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Export.c -o build/temp.linux-x86_64-2.7/layer4/Export.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Cmd.c -o build/temp.linux-x86_64-2.7/layer4/Cmd.o BUILDSTDERR: layer4/Cmd.c: In function 'APIEnter': BUILDSTDERR: layer4/Cmd.c:132:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'APIEnterBlocked': BUILDSTDERR: layer4/Cmd.c:167:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'APIExit': BUILDSTDERR: layer4/Cmd.c:203:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'APIExitBlocked': BUILDSTDERR: layer4/Cmd.c:213:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] BUILDSTDERR: ENDFD; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'CmdAlign': BUILDSTDERR: layer4/Cmd.c:2203:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float result = -1.0; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'Cmd_New': BUILDSTDERR: layer4/Cmd.c:4193:11: warning: variable 'ok' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ok = true; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'CmdPNG': BUILDSTDERR: layer4/Cmd.c:5985:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses] BUILDSTDERR: if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) { BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'CmdLoadObject': BUILDSTDERR: layer4/Cmd.c:6937:9: warning: variable 'isTmp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int isTmp; BUILDSTDERR: ^ BUILDSTDERR: layer4/Cmd.c: In function 'CmdSetObjectColor': BUILDSTDERR: layer4/Cmd.c:7891:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int result = -1; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(nextline, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp: In function 'int read_pbeq_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:262:55: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] BUILDSTDERR: printf("pbeqplugin) offset: %d\n", ftell(fd)); BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'bool desres::molfile::Timekeys::init(const string&)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] BUILDSTDERR: keys[i].size(), m_framesize); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format '%d' expects argument of type 'int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/PopUp.c -o build/temp.linux-x86_64-2.7/layer4/PopUp.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Menu.c -o build/temp.linux-x86_64-2.7/layer4/Menu.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:207:10: warning: unused variable 'l' [-Wunused-variable] BUILDSTDERR: int z, l, sentinel, convcnt; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:220:7: warning: unused variable 'leftover' [-Wunused-variable] BUILDSTDERR: int leftover = (nperslice - (nlines - 1) * 6); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:270:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 13, edm->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); // go on to next line BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp: In function 'int read_mmcif_timestep(void*, int, molfile_timestep_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:85:14: warning: unused variable 'data' [-Wunused-variable] BUILDSTDERR: mmcifdata *data = (mmcifdata *)mydata; BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:64:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'const char* get_pte_label(int)' defined but not used [-Wunused-function] BUILDSTDERR: static const char *get_pte_label(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'float get_pte_mass(int)' defined but not used [-Wunused-function] BUILDSTDERR: static float get_pte_mass(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'float get_pte_vdw_radius(int)' defined but not used [-Wunused-function] BUILDSTDERR: static float get_pte_vdw_radius(const int idx) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx(const char *label) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:98:14: warning: 'void* open_mmcif_write(const char*, const char*, int)' defined but not used [-Wunused-function] BUILDSTDERR: static void *open_mmcif_write(const char *filename, const char *filetype, BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, cube->fd); // go on to next line BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:351:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(cube->fd, "%d", &cube->nsets); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:356:35: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(cube->fd, "%d", &orb); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void eatline(FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:141:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); // go on to next line BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx(const char *label) BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:137:12: warning: 'int vmd_file_is_executable(const char*)' defined but not used [-Wunused-function] BUILDSTDERR: static int vmd_file_is_executable(const char * filename) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable 'o' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable 's' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'int read_uhbd_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BUILDSTDERR: if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&headersize, sizeof(int), 1, fd); BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mol2->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mol2->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mol2->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mol2->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mol2->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mol2->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); // Read and ignore the mol_name BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); // Read the molecule info BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); // Read and ignore the mol_type BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); // Read the charge_type BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'int read_ccp4_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:370:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BUILDSTDERR: if ( fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:183:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(symData, 81, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:44:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:76:30: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, "%s\n", buf); // format BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:202:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf, 85, file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:254:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf, 85, file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:272:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf, 85, file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:286:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " %d", &cur); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:365:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(sdum, 512, file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:379:46: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(prm->title, sizeof(prm->title), file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:407:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(sdum, sizeof(sdum), file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:422:36: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: &prm->Jparm, &prm->Nparm); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:426:34: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: &prm->Natyp, &prm->Nphb); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:429:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: &prm->IfBox, &prm->Nmxrs, &prm->IfCap); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:431:36: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file,"%8d",&prm->Numextra); //BB BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:78:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, "%s\n", buf); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:86:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, "%s\n", buf); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:96:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, "%s\n", buf); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(nextline, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, bgf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:7: warning: unused variable 'x' [-Wunused-variable] BUILDSTDERR: int x, y, z, xsize, ysize, zsize, xysize, total; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:10: warning: unused variable 'y' [-Wunused-variable] BUILDSTDERR: int x, y, z, xsize, ysize, zsize, xysize, total; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:13: warning: unused variable 'z' [-Wunused-variable] BUILDSTDERR: int x, y, z, xsize, ysize, zsize, xysize, total; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(datablock, total * sizeof(float), 1, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'int read_plt_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BUILDSTDERR: if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(intHeader, sizeof(int), 5, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(floatHeader, sizeof(float), 6, fd); BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&dataBegin, sizeof(int), 1, fd); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function] BUILDSTDERR: static int fort_eat_recmark(FILE *ifp, int recmarklen) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function] BUILDSTDERR: static int fort_get_endian_reclen(int reclen, int word0, int word1, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function] BUILDSTDERR: static void strnwscpy(char *target, const char *source, const int len) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 80, infile); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Charges[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Masses[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Rk[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Req[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Tk[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Teq[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Pk[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Pn[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Phase[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Solty[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Cn1[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->Cn2[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->HB12[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &prm->HB6[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(file, " " DBLFMT, &H[i]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:854:46: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: &prm->Box[0], &prm->Box[1], &prm->Box[2]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:869:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: &prm->Xcap, &prm->Ycap, &prm->Zcap); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(brick, sizeof(char), 512, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:29: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, "%3s", keyWord); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:62: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:62: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:65: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:110:74: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, " %s %f", keyWord, &prod); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, " %s %f", keyWord, &plus); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(fd, " %s %f", keyWord, &sigma); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int count_mdf_bonds(const char*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:135:7: warning: unused variable 'retval' [-Wunused-variable] BUILDSTDERR: int retval; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:280:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mdf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:299:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mdf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:321:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mdf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:359:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mdf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:225:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mdf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:243:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, mdf->file); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:166:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:178:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:185:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&dataBegin, sizeof(int), 1, fd); BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function] BUILDSTDERR: static int fort_eat_recmark(FILE *ifp, int recmarklen) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function] BUILDSTDERR: static int fort_get_endian_reclen(int reclen, int word0, int word1, BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function] BUILDSTDERR: static void strnwscpy(char *target, const char *source, const int len) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:0, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:45: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/hash.c: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: 'int hash_delete(hash_t*, const char*)' defined but not used [-Wunused-function] BUILDSTDERR: VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: 'char* hash_stats(hash_t*)' defined but not used [-Wunused-function] BUILDSTDERR: VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf, n, mf->f); BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(brick, sizeof(char), 512, fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(fileHeader, sizeof(short), 19, fd); BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(line3, 1, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(line, 1, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(line, 1, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(line, 1, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(line, 1, 80, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(vertex, 3 * sizeof(float), nvert, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(access, 3 * sizeof(float), nvert, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(normal, 3 * sizeof(float), nvert, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(triangle, 3 * sizeof(int), ntriangles, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(properties, 3 * sizeof(float), nvert, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(striangle, sizeof(short), 3 * ntriangles, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: TRASH; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(properties, sizeof(float), 3 * nvert, infile); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_timestep(md_file*, md_ts*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1853:53: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: thiscoord[2] = xtc_receivebits(buf, bitsizeint[2]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1764:37: note: 'bitsizeint[2]' was declared here BUILDSTDERR: unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1852:53: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: thiscoord[1] = xtc_receivebits(buf, bitsizeint[1]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1764:37: note: 'bitsizeint[1]' was declared here BUILDSTDERR: unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3; BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1851:53: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: thiscoord[0] = xtc_receivebits(buf, bitsizeint[0]); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1764:37: note: 'bitsizeint[0]' was declared here BUILDSTDERR: unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3; BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_aligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:0, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap4_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap8_unaligned(void *v, long ndata) { BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] BUILDSTDERR: static void swap2_aligned(void *v, long ndata) { BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:234:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); // go on to next line BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:405:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:439:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:441:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:443:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:445:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:447:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:467:45: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:504:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 256, xsf->fd); BUILDSTDERR: ^ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:0: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] BUILDSTDERR: static int get_pte_idx_from_string(const char *label) { BUILDSTDERR: ^ g++ -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Raw.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython2.7 -o build/lib.linux-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o BUILDSTDERR: contrib/champ/os_memory.c: In function 'OSMemoryZero': BUILDSTDERR: contrib/champ/os_memory.c:65:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: while(count&&(((int)p)&mask)) { BUILDSTDERR: ^ BUILDSTDERR: contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': BUILDSTDERR: contrib/champ/os_memory.c:146:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: hash=(int)rec; BUILDSTDERR: ^ BUILDSTDERR: contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': BUILDSTDERR: contrib/champ/os_memory.c:159:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: hash=(int)rec; BUILDSTDERR: ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic build/temp.linux-x86_64-2.7/contrib/champ/chiral.o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o build/temp.linux-x86_64-2.7/contrib/champ/err2.o build/temp.linux-x86_64-2.7/contrib/champ/list.o build/temp.linux-x86_64-2.7/contrib/champ/vla.o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o build/temp.linux-x86_64-2.7/contrib/champ/sort.o build/temp.linux-x86_64-2.7/contrib/champ/champ.o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/chempy/champ/_champ.so + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.4wQ7k1 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + cd pymol-1.7.1 + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + /usr/bin/python -c 'import setuptools; execfile("setup.py")' install --skip-build --root /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 numpy not available running install running install_lib creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/make_cmd2.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web copying build/lib.linux-x86_64-2.7/pymol_web/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web copying build/lib.linux-x86_64-2.7/pymol_web/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples copying build/lib.linux-x86_64-2.7/pymol_web/examples/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples copying build/lib.linux-x86_64-2.7/pymol_web/examples/justhttpd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_wx copying build/lib.linux-x86_64-2.7/pmg_wx/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_wx creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.linux-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/models.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cex.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/map.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/place.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/io.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/_champ.so -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments copying build/lib.linux-x86_64-2.7/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fast copying build/lib.linux-x86_64-2.7/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fast creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/_cmd.so -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/fedora.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/util.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/api.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/m4x.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib copying build/lib.linux-x86_64-2.7/pymol/contrib/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl copying build/lib.linux-x86_64-2.7/pymol/opengl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-x86_64-2.7/pymol/opengl/gl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut copying build/lib.linux-x86_64-2.7/pymol/opengl/glut/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu copying build/lib.linux-x86_64-2.7/pymol/opengl/glu/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-x86_64-2.7/pymol/embed/epymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2/make_cmd2.py to make_cmd2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/pymolhttpd.py to pymolhttpd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples/justhttpd.py to justhttpd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing top-level names to pymol.egg-info/top_level.txt writing dependency_links to pymol.egg-info/dependency_links.txt writing manifest file 'pymol.egg-info/SOURCES.txt' BUILDSTDERR: warning: manifest_maker: standard file '-c' not found reading manifest file 'pymol.egg-info/SOURCES.txt' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol-1.7.1.3-py2.7.egg-info creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path copying data -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/data copying test -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin copying pymol -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin + echo '#!/bin/sh' + echo 'export PYMOL_PATH=/usr/lib64/python2.7/site-packages/pymol' + echo '/usr/bin/python /usr/lib64/python2.7/site-packages/pymol/__init__.py "$@"' + cp -pr data examples test scripts /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/ref/T01.log + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/T01.log + mkdir -p /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin + install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin/ + desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop + mkdir -p /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/pixmaps + install -p -m 644 /builddir/build/SOURCES/pymol-32.xpm /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/pixmaps/ + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/pymol-1.7.1 extracting debug info from /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/_cmd.so extracting debug info from /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/_champ.so /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. BUILDSTDERR: 50370 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: pymol-1.7.1-1.20140519svn4076.el7.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ogJF9y + umask 022 + cd /builddir/build/BUILD + cd pymol-1.7.1 + DOCDIR=/builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr LICENSE /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr README /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + exit 0 Provides: application() application(pymol.desktop) mimehandler(chemical/seq-aa-fasta) mimehandler(chemical/seq-na-fasta) mimehandler(chemical/x-mdl-molfile) mimehandler(chemical/x-mdl-sdf) mimehandler(chemical/x-mol2) mimehandler(chemical/x-pdb) mimehandler(chemical/x-xyz) pymol = 1.7.1-1.20140519svn4076.el7 pymol(x86-64) = 1.7.1-1.20140519svn4076.el7 Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires: /bin/csh /bin/sh /usr/bin/python libGL.so.1()(64bit) libGLEW.so.1.10()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH) Processing files: pymol-wxpython-1.7.1-1.20140519svn4076.el7.x86_64 Provides: pymol-wxpython = 1.7.1-1.20140519svn4076.el7 pymol-wxpython(x86-64) = 1.7.1-1.20140519svn4076.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 2.7 Processing files: pymol-debuginfo-1.7.1-1.20140519svn4076.el7.x86_64 Provides: pymol-debuginfo = 1.7.1-1.20140519svn4076.el7 pymol-debuginfo(x86-64) = 1.7.1-1.20140519svn4076.el7 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 Wrote: /builddir/build/RPMS/pymol-1.7.1-1.20140519svn4076.el7.x86_64.rpm Wrote: /builddir/build/RPMS/pymol-wxpython-1.7.1-1.20140519svn4076.el7.x86_64.rpm Wrote: /builddir/build/RPMS/pymol-debuginfo-1.7.1-1.20140519svn4076.el7.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.SlMrNX + umask 022 + cd /builddir/build/BUILD + cd pymol-1.7.1 + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + exit 0 Child return code was: 0