Warning: Permanently added '172.25.80.241' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 827452 --chroot epel-7-x86_64 --detached default Version: 0.22 Task: {'build_id': 827452, 'buildroot_pkgs': [], 'chroot': 'epel-7-x86_64', 'enable_net': True, 'fetch_sources_only': True, 'git_hash': '6185880e352ebcfef4ed329851c454e2ac79c52f', 'git_repo': 'jypelait/pymol/pymol', 'memory_reqs': 2048, 'package_name': 'pymol', 'package_version': '1.7.1-1.20140519svn4076.fc19', 'project_dirname': 'pymol', 'project_name': 'pymol', 'project_owner': 'jypelait', 'repos': [{'id': 'copr_base', 'name': 'Copr repository', 'url': 'https://copr-be.cloud.fedoraproject.org/results/jypelait/pymol/epel-7-x86_64/'}], 'source_json': {'clone_url': 'https://copr-dist-git.fedorainfracloud.org/git/jypelait/pymol/pymol.git', 'committish': '6185880e352ebcfef4ed329851c454e2ac79c52f'}, 'source_type': 8, 'submitter': 'jypelait', 'task_id': '827452-epel-7-x86_64', 'timeout': 64800, 'use_bootstrap_container': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jypelait/pymol/pymol.git /tmp/tmpzs0ah2fv/pymol --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jypelait/pymol/pymol.git', '/tmp/tmpzs0ah2fv/pymol', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/tmpzs0ah2fv/pymol'... Running: git checkout 6185880e352ebcfef4ed329851c454e2ac79c52f cmd: ['git', 'checkout', '6185880e352ebcfef4ed329851c454e2ac79c52f'] cwd: /tmp/tmpzs0ah2fv/pymol rc: 0 stdout: stderr: Note: checking out '6185880e352ebcfef4ed329851c454e2ac79c52f'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 6185880 automatic import of pymol 1.7.1-1.20140519svn4076.fc19 Running: cp -r . /tmp/tmpqllg6y1o cmd: ['cp', '-r', '.', '/tmp/tmpqllg6y1o'] cwd: /tmp/tmpzs0ah2fv/pymol rc: 0 stdout: stderr: Generated rpkg config: [rpkg] preprocess_spec = True # auto-packing is deprecated: auto_pack = True [git] lookaside = https://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(name)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = https://copr-dist-git.fedorainfracloud.org/git/%(module)s Writing config into /tmp/tmpzs0ah2fv/.config/rpkg.conf Running: rpkg -C /tmp/tmpzs0ah2fv/.config/rpkg.conf sources --outdir /tmp/tmpqllg6y1o cmd: ['rpkg', '-C', '/tmp/tmpzs0ah2fv/.config/rpkg.conf', 'sources', '--outdir', '/tmp/tmpqllg6y1o'] cwd: /tmp/tmpzs0ah2fv/pymol rc: 0 stdout: Downloading pymol-1.7.1-20140519svn4076.tar.xz from lookaside cache at copr-dist-git.fedorainfracloud.org stderr: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running: unbuffer /usr/bin/mock --buildsrpm --spec /tmp/tmpqllg6y1o/pymol.spec --sources /tmp/tmpqllg6y1o --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --define %_disable_source_fetch 0 --uniqueext 1542810627.471522 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/tmp/tmpqllg6y1o/pymol.spec) Config(827452-epel-7-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/827452-epel-7-x86_64-1542810627.471522/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: yum install Yum command has been deprecated, use dnf instead. See 'man dnf' and 'man yum2dnf' for more information. https://copr-be.cloud.fedoraproject.org/results/jypelait/pymol/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. base | 3.6 kB 00:00 epel | 3.2 kB 00:00 extras | 3.4 kB 00:00 sclo | 2.9 kB 00:00 sclo-rh | 3.0 kB 00:00 updates | 3.4 kB 00:00 (1/6): epel/primary | 3.6 MB 00:00 (2/6): extras/primary_db | 205 kB 00:00 (3/6): sclo/primary_db | 294 kB 00:00 (4/6): sclo-rh/primary_db | 3.7 MB 00:00 (5/6): updates/primary_db | 6.0 MB 00:00 (6/6): base/primary_db | 5.9 MB 00:04 epel 12708/12708 base/group_gz | 166 kB 00:00 epel/group_gz | 88 kB 00:00 Resolving Dependencies --> Running transaction check ---> Package bash.x86_64 0:4.2.46-30.el7 will be installed --> Processing Dependency: rtld(GNU_HASH) for package: bash-4.2.46-30.el7.x86_64 --> Processing Dependency: libdl.so.2(GLIBC_2.2.5)(64bit) for package: bash-4.2.46-30.el7.x86_64 --> Processing Dependency: libc.so.6(GLIBC_2.15)(64bit) for package: bash-4.2.46-30.el7.x86_64 --> Processing Dependency: libtinfo.so.5()(64bit) for package: bash-4.2.46-30.el7.x86_64 --> Processing Dependency: libdl.so.2()(64bit) for package: bash-4.2.46-30.el7.x86_64 ---> Package bzip2.x86_64 0:1.0.6-13.el7 will be installed --> Processing Dependency: bzip2-libs = 1.0.6-13.el7 for package: bzip2-1.0.6-13.el7.x86_64 --> Processing Dependency: libbz2.so.1()(64bit) for package: bzip2-1.0.6-13.el7.x86_64 ---> Package coreutils.x86_64 0:8.22-21.el7 will be installed --> Processing Dependency: ncurses for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libcrypto.so.10(libcrypto.so.10)(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libattr.so.1(ATTR_1.1)(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libacl.so.1(ACL_1.0)(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: gmp for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libselinux.so.1()(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libgmp.so.10()(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libcrypto.so.10()(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libcap.so.2()(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libattr.so.1()(64bit) for package: coreutils-8.22-21.el7.x86_64 --> Processing Dependency: libacl.so.1()(64bit) for package: coreutils-8.22-21.el7.x86_64 ---> Package cpio.x86_64 0:2.11-27.el7 will be installed ---> Package diffutils.x86_64 0:3.3-4.el7 will be installed ---> Package epel-release.noarch 0:7-11 will be installed --> Processing Dependency: redhat-release >= 7 for package: epel-release-7-11.noarch ---> Package epel-rpm-macros.noarch 0:7-19 will be installed --> Processing Dependency: python2-rpm-macros for package: epel-rpm-macros-7-19.noarch --> Processing Dependency: python-srpm-macros for package: epel-rpm-macros-7-19.noarch --> Processing Dependency: python-rpm-macros for package: epel-rpm-macros-7-19.noarch ---> Package findutils.x86_64 1:4.5.11-5.el7 will be installed ---> Package gawk.x86_64 0:4.0.2-4.el7_3.1 will be installed ---> Package gcc.x86_64 0:4.8.5-28.el7_5.1 will be installed --> Processing Dependency: libgomp = 4.8.5-28.el7_5.1 for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: cpp = 4.8.5-28.el7_5.1 for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libgcc >= 4.8.5-28.el7_5.1 for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: glibc-devel >= 2.2.90-12 for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: binutils >= 2.20.51.0.2-12 for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libz.so.1()(64bit) for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libmpfr.so.4()(64bit) for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libmpc.so.3()(64bit) for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libgomp.so.1()(64bit) for package: gcc-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libgcc_s.so.1()(64bit) for package: gcc-4.8.5-28.el7_5.1.x86_64 ---> Package gcc-c++.x86_64 0:4.8.5-28.el7_5.1 will be installed --> Processing Dependency: libstdc++-devel = 4.8.5-28.el7_5.1 for package: gcc-c++-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libstdc++ = 4.8.5-28.el7_5.1 for package: gcc-c++-4.8.5-28.el7_5.1.x86_64 --> Processing Dependency: libstdc++.so.6()(64bit) for package: gcc-c++-4.8.5-28.el7_5.1.x86_64 ---> Package grep.x86_64 0:2.20-3.el7 will be installed --> Processing Dependency: libpcre.so.1()(64bit) for package: grep-2.20-3.el7.x86_64 ---> Package gzip.x86_64 0:1.5-10.el7 will be installed ---> Package info.x86_64 0:5.1-5.el7 will be installed ---> Package make.x86_64 1:3.82-23.el7 will be installed ---> Package patch.x86_64 0:2.7.1-10.el7_5 will be installed ---> Package redhat-rpm-config.noarch 0:9.1.0-80.el7.centos will be installed --> Processing Dependency: rpm >= 4.9.0 for package: redhat-rpm-config-9.1.0-80.el7.centos.noarch --> Processing Dependency: dwz >= 0.4 for package: redhat-rpm-config-9.1.0-80.el7.centos.noarch --> Processing Dependency: zip for package: redhat-rpm-config-9.1.0-80.el7.centos.noarch --> Processing Dependency: perl-srpm-macros for package: redhat-rpm-config-9.1.0-80.el7.centos.noarch --> Processing Dependency: perl(Getopt::Long) for package: redhat-rpm-config-9.1.0-80.el7.centos.noarch --> Processing Dependency: /usr/bin/perl for package: redhat-rpm-config-9.1.0-80.el7.centos.noarch ---> Package rpm-build.x86_64 0:4.11.3-32.el7 will be installed --> Processing Dependency: pkgconfig >= 1:0.24 for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: elfutils >= 0.128 for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: perl(threads) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: perl(Thread::Queue) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: perl(File::Temp) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libpopt.so.0(LIBPOPT_0)(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libelf.so.1(ELFUTILS_1.0)(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: file for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: /usr/bin/gdb-add-index for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: librpmio.so.3()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: librpmbuild.so.3()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: librpm.so.3()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libpopt.so.0()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libnss3.so()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libmagic.so.1()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: liblzma.so.5()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: liblua-5.1.so()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libelf.so.1()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 --> Processing Dependency: libdb-5.3.so()(64bit) for package: rpm-build-4.11.3-32.el7.x86_64 ---> Package sed.x86_64 0:4.2.2-5.el7 will be installed ---> Package shadow-utils.x86_64 2:4.1.5.1-24.el7 will be installed --> Processing Dependency: audit-libs >= 1.6.5 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: setup for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libsemanage.so.1(LIBSEMANAGE_1.0)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libsemanage.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 --> Processing Dependency: libaudit.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64 ---> Package tar.x86_64 2:1.26-34.el7 will be installed ---> Package unzip.x86_64 0:6.0-19.el7 will be installed ---> Package util-linux.x86_64 0:2.23.2-52.el7_5.1 will be installed --> Processing Dependency: libuuid = 2.23.2-52.el7_5.1 for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount = 2.23.2-52.el7_5.1 for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid = 2.23.2-52.el7_5.1 for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: pam >= 1.1.3-7 for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libuuid.so.1(UUID_1.0)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libutempter.so.0(UTEMPTER_1.1)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libudev.so.1(LIBUDEV_183)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libsystemd.so.0(LIBSYSTEMD_209)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libpam_misc.so.0(LIBPAM_MISC_1.0)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libpam.so.0(LIBPAM_1.0)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.25)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.23)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.22)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.21)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.20)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1(MOUNT_2.19)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.21)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.20)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.18)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.17)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_2.15)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1(BLKID_1.0)(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: /etc/pam.d/system-auth for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libuuid.so.1()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libutempter.so.0()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libuser.so.1()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libudev.so.1()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libsystemd.so.0()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libpam_misc.so.0()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libpam.so.0()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libmount.so.1()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libcap-ng.so.0()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 --> Processing Dependency: libblkid.so.1()(64bit) for package: util-linux-2.23.2-52.el7_5.1.x86_64 ---> Package which.x86_64 0:2.20-7.el7 will be installed ---> Package xz.x86_64 0:5.2.2-1.el7 will be installed --> Running transaction check ---> Package audit-libs.x86_64 0:2.8.1-3.el7_5.1 will be installed ---> Package binutils.x86_64 0:2.27-28.base.el7_5.1 will be installed --> Processing Dependency: /usr/sbin/alternatives for package: binutils-2.27-28.base.el7_5.1.x86_64 --> Processing Dependency: /usr/sbin/alternatives for package: binutils-2.27-28.base.el7_5.1.x86_64 ---> Package bzip2-libs.x86_64 0:1.0.6-13.el7 will be installed ---> Package centos-release.x86_64 0:7-5.1804.5.el7.centos will be installed ---> Package cpp.x86_64 0:4.8.5-28.el7_5.1 will be installed --> Processing Dependency: filesystem >= 3 for package: cpp-4.8.5-28.el7_5.1.x86_64 ---> Package dwz.x86_64 0:0.11-3.el7 will be installed ---> Package elfutils.x86_64 0:0.170-4.el7 will be installed --> Processing Dependency: elfutils-libs(x86-64) = 0.170-4.el7 for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.167)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.165)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.158)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.149)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.148)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.138)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.130)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.127)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.126)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1(ELFUTILS_0.122)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libasm.so.1(ELFUTILS_1.0)(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libdw.so.1()(64bit) for package: elfutils-0.170-4.el7.x86_64 --> Processing Dependency: libasm.so.1()(64bit) for package: elfutils-0.170-4.el7.x86_64 ---> Package elfutils-libelf.x86_64 0:0.170-4.el7 will be installed ---> Package file.x86_64 0:5.11-33.el7 will be installed ---> Package file-libs.x86_64 0:5.11-33.el7 will be installed ---> Package gdb.x86_64 0:7.6.1-110.el7 will be installed --> Processing Dependency: libreadline.so.6()(64bit) for package: gdb-7.6.1-110.el7.x86_64 --> Processing Dependency: libpython2.7.so.1.0()(64bit) for package: gdb-7.6.1-110.el7.x86_64 --> Processing Dependency: libexpat.so.1()(64bit) for package: gdb-7.6.1-110.el7.x86_64 ---> Package glibc.x86_64 0:2.17-222.el7 will be installed --> Processing Dependency: glibc-common = 2.17-222.el7 for package: glibc-2.17-222.el7.x86_64 --> Processing Dependency: libfreebl3.so(NSSRAWHASH_3.12.3)(64bit) for package: glibc-2.17-222.el7.x86_64 --> Processing Dependency: basesystem for package: glibc-2.17-222.el7.x86_64 --> Processing Dependency: libfreebl3.so()(64bit) for package: glibc-2.17-222.el7.x86_64 ---> Package glibc-devel.x86_64 0:2.17-222.el7 will be installed --> Processing Dependency: glibc-headers = 2.17-222.el7 for package: glibc-devel-2.17-222.el7.x86_64 --> Processing Dependency: glibc-headers for package: glibc-devel-2.17-222.el7.x86_64 ---> Package gmp.x86_64 1:6.0.0-15.el7 will be installed ---> Package libacl.x86_64 0:2.2.51-14.el7 will be installed ---> Package libattr.x86_64 0:2.4.46-13.el7 will be installed ---> Package libblkid.x86_64 0:2.23.2-52.el7_5.1 will be installed ---> Package libcap.x86_64 0:2.22-9.el7 will be installed ---> Package libcap-ng.x86_64 0:0.7.5-4.el7 will be installed ---> Package libdb.x86_64 0:5.3.21-24.el7 will be installed ---> Package libgcc.x86_64 0:4.8.5-28.el7_5.1 will be installed ---> Package libgomp.x86_64 0:4.8.5-28.el7_5.1 will be installed ---> Package libmount.x86_64 0:2.23.2-52.el7_5.1 will be installed ---> Package libmpc.x86_64 0:1.0.1-3.el7 will be installed ---> Package libselinux.x86_64 0:2.5-12.el7 will be installed --> Processing Dependency: libsepol(x86-64) >= 2.5-6 for package: libselinux-2.5-12.el7.x86_64 --> Processing Dependency: libsepol.so.1(LIBSEPOL_1.0)(64bit) for package: libselinux-2.5-12.el7.x86_64 --> Processing Dependency: libsepol.so.1()(64bit) for package: libselinux-2.5-12.el7.x86_64 ---> Package libsemanage.x86_64 0:2.5-11.el7 will be installed --> Processing Dependency: libustr-1.0.so.1(USTR_1.0.1)(64bit) for package: libsemanage-2.5-11.el7.x86_64 --> Processing Dependency: libustr-1.0.so.1(USTR_1.0)(64bit) for package: libsemanage-2.5-11.el7.x86_64 --> Processing Dependency: libustr-1.0.so.1()(64bit) for package: libsemanage-2.5-11.el7.x86_64 ---> Package libstdc++.x86_64 0:4.8.5-28.el7_5.1 will be installed ---> Package libstdc++-devel.x86_64 0:4.8.5-28.el7_5.1 will be installed ---> Package libuser.x86_64 0:0.60-9.el7 will be installed --> Processing Dependency: libldap-2.4.so.2()(64bit) for package: libuser-0.60-9.el7.x86_64 --> Processing Dependency: libgobject-2.0.so.0()(64bit) for package: libuser-0.60-9.el7.x86_64 --> Processing Dependency: libgmodule-2.0.so.0()(64bit) for package: libuser-0.60-9.el7.x86_64 --> Processing Dependency: libglib-2.0.so.0()(64bit) for package: libuser-0.60-9.el7.x86_64 ---> Package libutempter.x86_64 0:1.1.6-4.el7 will be installed ---> Package libuuid.x86_64 0:2.23.2-52.el7_5.1 will be installed ---> Package lua.x86_64 0:5.1.4-15.el7 will be installed ---> Package mpfr.x86_64 0:3.1.1-4.el7 will be installed ---> Package ncurses.x86_64 0:5.9-14.20130511.el7_4 will be installed ---> Package ncurses-libs.x86_64 0:5.9-14.20130511.el7_4 will be installed --> Processing Dependency: ncurses-base = 5.9-14.20130511.el7_4 for package: ncurses-libs-5.9-14.20130511.el7_4.x86_64 ---> Package nss.x86_64 0:3.36.0-7.el7_5 will be installed --> Processing Dependency: nss-util >= 3.36.0-1 for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: nss-softokn(x86-64) >= 3.36.0-1 for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: nspr >= 4.19.0 for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: nss-system-init for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: nss-pem(x86-64) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.31)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.24)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.21)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.17.1)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.15)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.14)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.13)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.12.5)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.12.3)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so(NSSUTIL_3.12)(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libplds4.so()(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libplc4.so()(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnssutil3.so()(64bit) for package: nss-3.36.0-7.el7_5.x86_64 --> Processing Dependency: libnspr4.so()(64bit) for package: nss-3.36.0-7.el7_5.x86_64 ---> Package openssl-libs.x86_64 1:1.0.2k-12.el7 will be installed --> Processing Dependency: ca-certificates >= 2008-5 for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 --> Processing Dependency: libkrb5.so.3(krb5_3_MIT)(64bit) for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 --> Processing Dependency: libk5crypto.so.3(k5crypto_3_MIT)(64bit) for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 --> Processing Dependency: libkrb5.so.3()(64bit) for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 --> Processing Dependency: libk5crypto.so.3()(64bit) for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 --> Processing Dependency: libgssapi_krb5.so.2()(64bit) for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 --> Processing Dependency: libcom_err.so.2()(64bit) for package: 1:openssl-libs-1.0.2k-12.el7.x86_64 ---> Package pam.x86_64 0:1.1.8-22.el7 will be installed --> Processing Dependency: libpwquality >= 0.9.9 for package: pam-1.1.8-22.el7.x86_64 --> Processing Dependency: cracklib-dicts >= 2.8 for package: pam-1.1.8-22.el7.x86_64 --> Processing Dependency: libcrack.so.2()(64bit) for package: pam-1.1.8-22.el7.x86_64 ---> Package pcre.x86_64 0:8.32-17.el7 will be installed ---> Package perl.x86_64 4:5.16.3-292.el7 will be installed --> Processing Dependency: perl-libs = 4:5.16.3-292.el7 for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Socket) >= 1.3 for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Scalar::Util) >= 1.10 for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl-macros for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl-libs for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(threads::shared) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(constant) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Time::Local) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Time::HiRes) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Storable) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Socket) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Scalar::Util) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Pod::Simple::XHTML) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Pod::Simple::Search) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Filter::Util::Call) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(File::Spec::Unix) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(File::Spec::Functions) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(File::Spec) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(File::Path) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Exporter) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Cwd) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: perl(Carp) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: libperl.so()(64bit) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: libgdbm_compat.so.4()(64bit) for package: 4:perl-5.16.3-292.el7.x86_64 --> Processing Dependency: libgdbm.so.4()(64bit) for package: 4:perl-5.16.3-292.el7.x86_64 ---> Package perl-File-Temp.noarch 0:0.23.01-3.el7 will be installed ---> Package perl-Getopt-Long.noarch 0:2.40-3.el7 will be installed --> Processing Dependency: perl(Pod::Usage) >= 1.14 for package: perl-Getopt-Long-2.40-3.el7.noarch --> Processing Dependency: perl(Text::ParseWords) for package: perl-Getopt-Long-2.40-3.el7.noarch ---> Package perl-Thread-Queue.noarch 0:3.02-2.el7 will be installed ---> Package perl-srpm-macros.noarch 0:1-8.el7 will be installed ---> Package perl-threads.x86_64 0:1.87-4.el7 will be installed ---> Package pkgconfig.x86_64 1:0.27.1-4.el7 will be installed ---> Package popt.x86_64 0:1.13-16.el7 will be installed ---> Package python-rpm-macros.noarch 0:3-22.el7 will be installed ---> Package python-srpm-macros.noarch 0:3-22.el7 will be installed ---> Package python2-rpm-macros.noarch 0:3-22.el7 will be installed ---> Package rpm.x86_64 0:4.11.3-32.el7 will be installed --> Processing Dependency: curl for package: rpm-4.11.3-32.el7.x86_64 --> Processing Dependency: /usr/bin/db_stat for package: rpm-4.11.3-32.el7.x86_64 ---> Package rpm-build-libs.x86_64 0:4.11.3-32.el7 will be installed --> Processing Dependency: /usr/bin/gpg2 for package: rpm-build-libs-4.11.3-32.el7.x86_64 ---> Package rpm-libs.x86_64 0:4.11.3-32.el7 will be installed ---> Package setup.noarch 0:2.8.71-9.el7 will be installed ---> Package systemd-libs.x86_64 0:219-57.el7_5.3 will be installed --> Processing Dependency: libgcrypt.so.11(GCRYPT_1.2)(64bit) for package: systemd-libs-219-57.el7_5.3.x86_64 --> Processing Dependency: liblz4.so.1()(64bit) for package: systemd-libs-219-57.el7_5.3.x86_64 --> Processing Dependency: libgpg-error.so.0()(64bit) for package: systemd-libs-219-57.el7_5.3.x86_64 --> Processing Dependency: libgcrypt.so.11()(64bit) for package: systemd-libs-219-57.el7_5.3.x86_64 ---> Package xz-libs.x86_64 0:5.2.2-1.el7 will be installed ---> Package zip.x86_64 0:3.0-11.el7 will be installed ---> Package zlib.x86_64 0:1.2.7-17.el7 will be installed --> Running transaction check ---> Package basesystem.noarch 0:10.0-7.el7.centos will be installed ---> Package ca-certificates.noarch 0:2018.2.22-70.0.el7_5 will be installed --> Processing Dependency: p11-kit-trust >= 0.23.5 for package: ca-certificates-2018.2.22-70.0.el7_5.noarch --> Processing Dependency: p11-kit >= 0.23.5 for package: ca-certificates-2018.2.22-70.0.el7_5.noarch ---> Package chkconfig.x86_64 0:1.7.4-1.el7 will be installed ---> Package cracklib.x86_64 0:2.9.0-11.el7 will be installed ---> Package cracklib-dicts.x86_64 0:2.9.0-11.el7 will be installed ---> Package curl.x86_64 0:7.29.0-46.el7 will be installed --> Processing Dependency: libcurl = 7.29.0-46.el7 for package: curl-7.29.0-46.el7.x86_64 --> Processing Dependency: libcurl.so.4()(64bit) for package: curl-7.29.0-46.el7.x86_64 ---> Package elfutils-libs.x86_64 0:0.170-4.el7 will be installed --> Processing Dependency: default-yama-scope for package: elfutils-libs-0.170-4.el7.x86_64 ---> Package expat.x86_64 0:2.1.0-10.el7_3 will be installed ---> Package filesystem.x86_64 0:3.2-25.el7 will be installed ---> Package gdbm.x86_64 0:1.10-8.el7 will be installed ---> Package glib2.x86_64 0:2.54.2-2.el7 will be installed --> Processing Dependency: shared-mime-info for package: glib2-2.54.2-2.el7.x86_64 --> Processing Dependency: libffi.so.6()(64bit) for package: glib2-2.54.2-2.el7.x86_64 ---> Package glibc-common.x86_64 0:2.17-222.el7 will be installed --> Processing Dependency: tzdata >= 2003a for package: glibc-common-2.17-222.el7.x86_64 ---> Package glibc-headers.x86_64 0:2.17-222.el7 will be installed --> Processing Dependency: kernel-headers >= 2.2.1 for package: glibc-headers-2.17-222.el7.x86_64 --> Processing Dependency: kernel-headers for package: glibc-headers-2.17-222.el7.x86_64 ---> Package gnupg2.x86_64 0:2.0.22-5.el7_5 will be installed --> Processing Dependency: pinentry for package: gnupg2-2.0.22-5.el7_5.x86_64 --> Processing Dependency: libassuan.so.0(LIBASSUAN_1.0)(64bit) for package: gnupg2-2.0.22-5.el7_5.x86_64 --> Processing Dependency: libpth.so.20()(64bit) for package: gnupg2-2.0.22-5.el7_5.x86_64 --> Processing Dependency: libassuan.so.0()(64bit) for package: gnupg2-2.0.22-5.el7_5.x86_64 ---> Package krb5-libs.x86_64 0:1.15.1-19.el7 will be installed --> Processing Dependency: keyutils-libs >= 1.5.8 for package: krb5-libs-1.15.1-19.el7.x86_64 --> Processing Dependency: libkeyutils.so.1(KEYUTILS_1.5)(64bit) for package: krb5-libs-1.15.1-19.el7.x86_64 --> Processing Dependency: libkeyutils.so.1(KEYUTILS_1.0)(64bit) for package: krb5-libs-1.15.1-19.el7.x86_64 --> Processing Dependency: libkeyutils.so.1(KEYUTILS_0.3)(64bit) for package: krb5-libs-1.15.1-19.el7.x86_64 --> Processing Dependency: libverto.so.1()(64bit) for package: krb5-libs-1.15.1-19.el7.x86_64 --> Processing Dependency: libkeyutils.so.1()(64bit) for package: krb5-libs-1.15.1-19.el7.x86_64 ---> Package libcom_err.x86_64 0:1.42.9-12.el7_5 will be installed ---> Package libdb-utils.x86_64 0:5.3.21-24.el7 will be installed ---> Package libgcrypt.x86_64 0:1.5.3-14.el7 will be installed ---> Package libgpg-error.x86_64 0:1.12-3.el7 will be installed ---> Package libpwquality.x86_64 0:1.2.3-5.el7 will be installed ---> Package libsepol.x86_64 0:2.5-8.1.el7 will be installed ---> Package lz4.x86_64 0:1.7.5-2.el7 will be installed ---> Package ncurses-base.noarch 0:5.9-14.20130511.el7_4 will be installed ---> Package nspr.x86_64 0:4.19.0-1.el7_5 will be installed ---> Package nss-pem.x86_64 0:1.0.3-4.el7 will be installed ---> Package nss-softokn.x86_64 0:3.36.0-5.el7_5 will be installed --> Processing Dependency: libsqlite3.so.0()(64bit) for package: nss-softokn-3.36.0-5.el7_5.x86_64 ---> Package nss-softokn-freebl.x86_64 0:3.36.0-5.el7_5 will be installed ---> Package nss-sysinit.x86_64 0:3.36.0-7.el7_5 will be installed ---> Package nss-util.x86_64 0:3.36.0-1.el7_5 will be installed ---> Package openldap.x86_64 0:2.4.44-15.el7_5 will be installed --> Processing Dependency: nss-tools for package: openldap-2.4.44-15.el7_5.x86_64 --> Processing Dependency: libsasl2.so.3()(64bit) for package: openldap-2.4.44-15.el7_5.x86_64 ---> Package perl-Carp.noarch 0:1.26-244.el7 will be installed ---> Package perl-Exporter.noarch 0:5.68-3.el7 will be installed ---> Package perl-File-Path.noarch 0:2.09-2.el7 will be installed ---> Package perl-Filter.x86_64 0:1.49-3.el7 will be installed ---> Package perl-PathTools.x86_64 0:3.40-5.el7 will be installed ---> Package perl-Pod-Simple.noarch 1:3.28-4.el7 will be installed --> Processing Dependency: perl(Pod::Escapes) >= 1.04 for package: 1:perl-Pod-Simple-3.28-4.el7.noarch --> Processing Dependency: perl(Encode) for package: 1:perl-Pod-Simple-3.28-4.el7.noarch ---> Package perl-Pod-Usage.noarch 0:1.63-3.el7 will be installed --> Processing Dependency: perl(Pod::Text) >= 3.15 for package: perl-Pod-Usage-1.63-3.el7.noarch --> Processing Dependency: perl-Pod-Perldoc for package: perl-Pod-Usage-1.63-3.el7.noarch ---> Package perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 will be installed ---> Package perl-Socket.x86_64 0:2.010-4.el7 will be installed ---> Package perl-Storable.x86_64 0:2.45-3.el7 will be installed ---> Package perl-Text-ParseWords.noarch 0:3.29-4.el7 will be installed ---> Package perl-Time-HiRes.x86_64 4:1.9725-3.el7 will be installed ---> Package perl-Time-Local.noarch 0:1.2300-2.el7 will be installed ---> Package perl-constant.noarch 0:1.27-2.el7 will be installed ---> Package perl-libs.x86_64 4:5.16.3-292.el7 will be installed ---> Package perl-macros.x86_64 4:5.16.3-292.el7 will be installed ---> Package perl-threads-shared.x86_64 0:1.43-6.el7 will be installed ---> Package python-libs.x86_64 0:2.7.5-69.el7_5 will be installed ---> Package readline.x86_64 0:6.2-10.el7 will be installed ---> Package ustr.x86_64 0:1.0.4-16.el7 will be installed --> Running transaction check ---> Package cyrus-sasl-lib.x86_64 0:2.1.26-23.el7 will be installed ---> Package elfutils-default-yama-scope.noarch 0:0.170-4.el7 will be installed --> Processing Dependency: systemd for package: elfutils-default-yama-scope-0.170-4.el7.noarch --> Processing Dependency: systemd for package: elfutils-default-yama-scope-0.170-4.el7.noarch ---> Package kernel-headers.x86_64 0:3.10.0-862.14.4.el7 will be installed ---> Package keyutils-libs.x86_64 0:1.5.8-3.el7 will be installed ---> Package libassuan.x86_64 0:2.1.0-3.el7 will be installed ---> Package libcurl.x86_64 0:7.29.0-46.el7 will be installed --> Processing Dependency: libssh2(x86-64) >= 1.4.3 for package: libcurl-7.29.0-46.el7.x86_64 --> Processing Dependency: libidn.so.11(LIBIDN_1.0)(64bit) for package: libcurl-7.29.0-46.el7.x86_64 --> Processing Dependency: libssh2.so.1()(64bit) for package: libcurl-7.29.0-46.el7.x86_64 --> Processing Dependency: libidn.so.11()(64bit) for package: libcurl-7.29.0-46.el7.x86_64 ---> Package libffi.x86_64 0:3.0.13-18.el7 will be installed ---> Package libverto.x86_64 0:0.2.5-4.el7 will be installed ---> Package nss-tools.x86_64 0:3.36.0-7.el7_5 will be installed ---> Package p11-kit.x86_64 0:0.23.5-3.el7 will be installed ---> Package p11-kit-trust.x86_64 0:0.23.5-3.el7 will be installed --> Processing Dependency: libtasn1.so.6(LIBTASN1_0_3)(64bit) for package: p11-kit-trust-0.23.5-3.el7.x86_64 --> Processing Dependency: libtasn1.so.6()(64bit) for package: p11-kit-trust-0.23.5-3.el7.x86_64 ---> Package perl-Encode.x86_64 0:2.51-7.el7 will be installed ---> Package perl-Pod-Escapes.noarch 1:1.04-292.el7 will be installed ---> Package perl-Pod-Perldoc.noarch 0:3.20-4.el7 will be installed --> Processing Dependency: perl(parent) for package: perl-Pod-Perldoc-3.20-4.el7.noarch --> Processing Dependency: perl(HTTP::Tiny) for package: perl-Pod-Perldoc-3.20-4.el7.noarch --> Processing Dependency: groff-base for package: perl-Pod-Perldoc-3.20-4.el7.noarch ---> Package perl-podlators.noarch 0:2.5.1-3.el7 will be installed ---> Package pinentry.x86_64 0:0.8.1-17.el7 will be installed ---> Package pth.x86_64 0:2.0.7-23.el7 will be installed ---> Package shared-mime-info.x86_64 0:1.8-4.el7 will be installed --> Processing Dependency: libxml2.so.2(LIBXML2_2.4.30)(64bit) for package: shared-mime-info-1.8-4.el7.x86_64 --> Processing Dependency: libxml2.so.2()(64bit) for package: shared-mime-info-1.8-4.el7.x86_64 ---> Package sqlite.x86_64 0:3.7.17-8.el7 will be installed ---> Package tzdata.noarch 0:2018f-2.el7 will be installed --> Running transaction check ---> Package groff-base.x86_64 0:1.22.2-8.el7 will be installed ---> Package libidn.x86_64 0:1.28-4.el7 will be installed ---> Package libssh2.x86_64 0:1.4.3-10.el7_2.1 will be installed ---> Package libtasn1.x86_64 0:4.10-1.el7 will be installed ---> Package libxml2.x86_64 0:2.9.1-6.el7_2.3 will be installed ---> Package perl-HTTP-Tiny.noarch 0:0.033-3.el7 will be installed ---> Package perl-parent.noarch 1:0.225-244.el7 will be installed ---> Package systemd.x86_64 0:219-57.el7_5.3 will be installed --> Processing Dependency: kmod >= 18-4 for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: libkmod.so.2(LIBKMOD_5)(64bit) for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: libcryptsetup.so.4(CRYPTSETUP_1.0)(64bit) for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: dbus for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: acl for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: libqrencode.so.3()(64bit) for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: libkmod.so.2()(64bit) for package: systemd-219-57.el7_5.3.x86_64 --> Processing Dependency: libcryptsetup.so.4()(64bit) for package: systemd-219-57.el7_5.3.x86_64 --> Running transaction check ---> Package acl.x86_64 0:2.2.51-14.el7 will be installed ---> Package cryptsetup-libs.x86_64 0:1.7.4-4.el7 will be installed --> Processing Dependency: libdevmapper.so.1.02(DM_1_02_97)(64bit) for package: cryptsetup-libs-1.7.4-4.el7.x86_64 --> Processing Dependency: libdevmapper.so.1.02(Base)(64bit) for package: cryptsetup-libs-1.7.4-4.el7.x86_64 --> Processing Dependency: libdevmapper.so.1.02()(64bit) for package: cryptsetup-libs-1.7.4-4.el7.x86_64 ---> Package dbus.x86_64 1:1.10.24-7.el7 will be installed --> Processing Dependency: dbus-libs(x86-64) = 1:1.10.24-7.el7 for package: 1:dbus-1.10.24-7.el7.x86_64 --> Processing Dependency: libdbus-1.so.3(LIBDBUS_PRIVATE_1.10.24)(64bit) for package: 1:dbus-1.10.24-7.el7.x86_64 --> Processing Dependency: libdbus-1.so.3(LIBDBUS_1_3)(64bit) for package: 1:dbus-1.10.24-7.el7.x86_64 --> Processing Dependency: libdbus-1.so.3()(64bit) for package: 1:dbus-1.10.24-7.el7.x86_64 ---> Package kmod.x86_64 0:20-21.el7 will be installed --> Processing Dependency: dracut for package: kmod-20-21.el7.x86_64 ---> Package kmod-libs.x86_64 0:20-21.el7 will be installed ---> Package qrencode-libs.x86_64 0:3.4.1-3.el7 will be installed --> Running transaction check ---> Package dbus-libs.x86_64 1:1.10.24-7.el7 will be installed ---> Package device-mapper-libs.x86_64 7:1.02.146-4.el7 will be installed --> Processing Dependency: device-mapper = 7:1.02.146-4.el7 for package: 7:device-mapper-libs-1.02.146-4.el7.x86_64 ---> Package dracut.x86_64 0:033-535.el7_5.1 will be installed --> Processing Dependency: procps-ng for package: dracut-033-535.el7_5.1.x86_64 --> Processing Dependency: kpartx for package: dracut-033-535.el7_5.1.x86_64 --> Processing Dependency: hardlink for package: dracut-033-535.el7_5.1.x86_64 --> Running transaction check ---> Package device-mapper.x86_64 7:1.02.146-4.el7 will be installed ---> Package hardlink.x86_64 1:1.0-19.el7 will be installed ---> Package kpartx.x86_64 0:0.4.9-119.el7_5.1 will be installed ---> Package procps-ng.x86_64 0:3.3.10-17.el7_5.2 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing for group install "Buildsystem building group": bash x86_64 4.2.46-30.el7 base 1.0 M bzip2 x86_64 1.0.6-13.el7 base 52 k coreutils x86_64 8.22-21.el7 base 3.3 M cpio x86_64 2.11-27.el7 base 211 k diffutils x86_64 3.3-4.el7 base 322 k epel-release noarch 7-11 epel 15 k epel-rpm-macros noarch 7-19 epel 13 k findutils x86_64 1:4.5.11-5.el7 base 559 k gawk x86_64 4.0.2-4.el7_3.1 base 874 k gcc x86_64 4.8.5-28.el7_5.1 updates 16 M gcc-c++ x86_64 4.8.5-28.el7_5.1 updates 7.2 M grep x86_64 2.20-3.el7 base 344 k gzip x86_64 1.5-10.el7 base 130 k info x86_64 5.1-5.el7 base 233 k make x86_64 1:3.82-23.el7 base 420 k patch x86_64 2.7.1-10.el7_5 updates 110 k redhat-rpm-config noarch 9.1.0-80.el7.centos base 79 k rpm-build x86_64 4.11.3-32.el7 base 147 k sed x86_64 4.2.2-5.el7 base 231 k shadow-utils x86_64 2:4.1.5.1-24.el7 base 1.1 M tar x86_64 2:1.26-34.el7 base 845 k unzip x86_64 6.0-19.el7 base 170 k util-linux x86_64 2.23.2-52.el7_5.1 updates 2.0 M which x86_64 2.20-7.el7 base 41 k xz x86_64 5.2.2-1.el7 base 229 k Installing for dependencies: acl x86_64 2.2.51-14.el7 base 81 k audit-libs x86_64 2.8.1-3.el7_5.1 updates 99 k basesystem noarch 10.0-7.el7.centos base 5.0 k binutils x86_64 2.27-28.base.el7_5.1 updates 5.9 M bzip2-libs x86_64 1.0.6-13.el7 base 40 k ca-certificates noarch 2018.2.22-70.0.el7_5 updates 392 k centos-release x86_64 7-5.1804.5.el7.centos updates 25 k chkconfig x86_64 1.7.4-1.el7 base 181 k cpp x86_64 4.8.5-28.el7_5.1 updates 5.9 M cracklib x86_64 2.9.0-11.el7 base 80 k cracklib-dicts x86_64 2.9.0-11.el7 base 3.6 M cryptsetup-libs x86_64 1.7.4-4.el7 base 223 k curl x86_64 7.29.0-46.el7 base 268 k cyrus-sasl-lib x86_64 2.1.26-23.el7 base 155 k dbus x86_64 1:1.10.24-7.el7 base 245 k dbus-libs x86_64 1:1.10.24-7.el7 base 169 k device-mapper x86_64 7:1.02.146-4.el7 base 289 k device-mapper-libs x86_64 7:1.02.146-4.el7 base 316 k dracut x86_64 033-535.el7_5.1 updates 325 k dwz x86_64 0.11-3.el7 base 99 k elfutils x86_64 0.170-4.el7 base 282 k elfutils-default-yama-scope noarch 0.170-4.el7 base 31 k elfutils-libelf x86_64 0.170-4.el7 base 195 k elfutils-libs x86_64 0.170-4.el7 base 267 k expat x86_64 2.1.0-10.el7_3 base 81 k file x86_64 5.11-33.el7 base 57 k file-libs x86_64 5.11-33.el7 base 340 k filesystem x86_64 3.2-25.el7 base 1.0 M gdb x86_64 7.6.1-110.el7 base 2.4 M gdbm x86_64 1.10-8.el7 base 70 k glib2 x86_64 2.54.2-2.el7 base 2.4 M glibc x86_64 2.17-222.el7 base 3.6 M glibc-common x86_64 2.17-222.el7 base 11 M glibc-devel x86_64 2.17-222.el7 base 1.1 M glibc-headers x86_64 2.17-222.el7 base 678 k gmp x86_64 1:6.0.0-15.el7 base 281 k gnupg2 x86_64 2.0.22-5.el7_5 updates 1.5 M groff-base x86_64 1.22.2-8.el7 base 942 k hardlink x86_64 1:1.0-19.el7 base 14 k kernel-headers x86_64 3.10.0-862.14.4.el7 updates 7.1 M keyutils-libs x86_64 1.5.8-3.el7 base 25 k kmod x86_64 20-21.el7 base 121 k kmod-libs x86_64 20-21.el7 base 50 k kpartx x86_64 0.4.9-119.el7_5.1 updates 76 k krb5-libs x86_64 1.15.1-19.el7 updates 747 k libacl x86_64 2.2.51-14.el7 base 27 k libassuan x86_64 2.1.0-3.el7 base 63 k libattr x86_64 2.4.46-13.el7 base 18 k libblkid x86_64 2.23.2-52.el7_5.1 updates 178 k libcap x86_64 2.22-9.el7 base 47 k libcap-ng x86_64 0.7.5-4.el7 base 25 k libcom_err x86_64 1.42.9-12.el7_5 updates 41 k libcurl x86_64 7.29.0-46.el7 base 220 k libdb x86_64 5.3.21-24.el7 base 720 k libdb-utils x86_64 5.3.21-24.el7 base 132 k libffi x86_64 3.0.13-18.el7 base 30 k libgcc x86_64 4.8.5-28.el7_5.1 updates 101 k libgcrypt x86_64 1.5.3-14.el7 base 263 k libgomp x86_64 4.8.5-28.el7_5.1 updates 156 k libgpg-error x86_64 1.12-3.el7 base 87 k libidn x86_64 1.28-4.el7 base 209 k libmount x86_64 2.23.2-52.el7_5.1 updates 180 k libmpc x86_64 1.0.1-3.el7 base 51 k libpwquality x86_64 1.2.3-5.el7 base 85 k libselinux x86_64 2.5-12.el7 base 162 k libsemanage x86_64 2.5-11.el7 base 150 k libsepol x86_64 2.5-8.1.el7 base 297 k libssh2 x86_64 1.4.3-10.el7_2.1 base 134 k libstdc++ x86_64 4.8.5-28.el7_5.1 updates 303 k libstdc++-devel x86_64 4.8.5-28.el7_5.1 updates 1.5 M libtasn1 x86_64 4.10-1.el7 base 320 k libuser x86_64 0.60-9.el7 base 400 k libutempter x86_64 1.1.6-4.el7 base 25 k libuuid x86_64 2.23.2-52.el7_5.1 updates 81 k libverto x86_64 0.2.5-4.el7 base 16 k libxml2 x86_64 2.9.1-6.el7_2.3 base 668 k lua x86_64 5.1.4-15.el7 base 201 k lz4 x86_64 1.7.5-2.el7 base 98 k mpfr x86_64 3.1.1-4.el7 base 203 k ncurses x86_64 5.9-14.20130511.el7_4 base 304 k ncurses-base noarch 5.9-14.20130511.el7_4 base 68 k ncurses-libs x86_64 5.9-14.20130511.el7_4 base 316 k nspr x86_64 4.19.0-1.el7_5 updates 127 k nss x86_64 3.36.0-7.el7_5 updates 835 k nss-pem x86_64 1.0.3-4.el7 base 73 k nss-softokn x86_64 3.36.0-5.el7_5 updates 315 k nss-softokn-freebl x86_64 3.36.0-5.el7_5 updates 222 k nss-sysinit x86_64 3.36.0-7.el7_5 updates 62 k nss-tools x86_64 3.36.0-7.el7_5 updates 515 k nss-util x86_64 3.36.0-1.el7_5 updates 78 k openldap x86_64 2.4.44-15.el7_5 updates 355 k openssl-libs x86_64 1:1.0.2k-12.el7 base 1.2 M p11-kit x86_64 0.23.5-3.el7 base 252 k p11-kit-trust x86_64 0.23.5-3.el7 base 129 k pam x86_64 1.1.8-22.el7 base 720 k pcre x86_64 8.32-17.el7 base 422 k perl x86_64 4:5.16.3-292.el7 base 8.0 M perl-Carp noarch 1.26-244.el7 base 19 k perl-Encode x86_64 2.51-7.el7 base 1.5 M perl-Exporter noarch 5.68-3.el7 base 28 k perl-File-Path noarch 2.09-2.el7 base 26 k perl-File-Temp noarch 0.23.01-3.el7 base 56 k perl-Filter x86_64 1.49-3.el7 base 76 k perl-Getopt-Long noarch 2.40-3.el7 base 56 k perl-HTTP-Tiny noarch 0.033-3.el7 base 38 k perl-PathTools x86_64 3.40-5.el7 base 82 k perl-Pod-Escapes noarch 1:1.04-292.el7 base 51 k perl-Pod-Perldoc noarch 3.20-4.el7 base 87 k perl-Pod-Simple noarch 1:3.28-4.el7 base 216 k perl-Pod-Usage noarch 1.63-3.el7 base 27 k perl-Scalar-List-Utils x86_64 1.27-248.el7 base 36 k perl-Socket x86_64 2.010-4.el7 base 49 k perl-Storable x86_64 2.45-3.el7 base 77 k perl-Text-ParseWords noarch 3.29-4.el7 base 14 k perl-Thread-Queue noarch 3.02-2.el7 base 17 k perl-Time-HiRes x86_64 4:1.9725-3.el7 base 45 k perl-Time-Local noarch 1.2300-2.el7 base 24 k perl-constant noarch 1.27-2.el7 base 19 k perl-libs x86_64 4:5.16.3-292.el7 base 688 k perl-macros x86_64 4:5.16.3-292.el7 base 43 k perl-parent noarch 1:0.225-244.el7 base 12 k perl-podlators noarch 2.5.1-3.el7 base 112 k perl-srpm-macros noarch 1-8.el7 base 4.6 k perl-threads x86_64 1.87-4.el7 base 49 k perl-threads-shared x86_64 1.43-6.el7 base 39 k pinentry x86_64 0.8.1-17.el7 base 73 k pkgconfig x86_64 1:0.27.1-4.el7 base 54 k popt x86_64 1.13-16.el7 base 42 k procps-ng x86_64 3.3.10-17.el7_5.2 updates 290 k pth x86_64 2.0.7-23.el7 base 89 k python-libs x86_64 2.7.5-69.el7_5 updates 5.6 M python-rpm-macros noarch 3-22.el7 epel 7.5 k python-srpm-macros noarch 3-22.el7 epel 7.0 k python2-rpm-macros noarch 3-22.el7 epel 6.3 k qrencode-libs x86_64 3.4.1-3.el7 base 50 k readline x86_64 6.2-10.el7 base 193 k rpm x86_64 4.11.3-32.el7 base 1.2 M rpm-build-libs x86_64 4.11.3-32.el7 base 105 k rpm-libs x86_64 4.11.3-32.el7 base 276 k setup noarch 2.8.71-9.el7 base 166 k shared-mime-info x86_64 1.8-4.el7 base 312 k sqlite x86_64 3.7.17-8.el7 base 393 k systemd x86_64 219-57.el7_5.3 updates 5.0 M systemd-libs x86_64 219-57.el7_5.3 updates 402 k tzdata noarch 2018f-2.el7 updates 484 k ustr x86_64 1.0.4-16.el7 base 92 k xz-libs x86_64 5.2.2-1.el7 base 103 k zip x86_64 3.0-11.el7 base 260 k zlib x86_64 1.2.7-17.el7 base 90 k Transaction Summary ================================================================================ Install 25 Packages (+149 Dependent packages) Total download size: 128 M Installed size: 460 M Downloading packages: warning: /var/lib/mock/827452-epel-7-x86_64-1542810627.471522/root/var/cache/yum/base/packages/basesystem-10.0-7.el7.centos.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID f4a80eb5: NOKEY Public key for basesystem-10.0-7.el7.centos.noarch.rpm is not installed (1/174): basesystem-10.0-7.el7.centos.noarch.rpm | 5.0 kB 00:00 (2/174): acl-2.2.51-14.el7.x86_64.rpm | 81 kB 00:00 Public key for audit-libs-2.8.1-3.el7_5.1.x86_64.rpm is not installed (3/174): audit-libs-2.8.1-3.el7_5.1.x86_64.rpm | 99 kB 00:00 (4/174): ca-certificates-2018.2.22-70.0.el7_5.noarch.rpm | 392 kB 00:00 (5/174): centos-release-7-5.1804.5.el7.centos.x86_64.rpm | 25 kB 00:00 (6/174): bzip2-1.0.6-13.el7.x86_64.rpm | 52 kB 00:00 (7/174): chkconfig-1.7.4-1.el7.x86_64.rpm | 181 kB 00:00 (8/174): binutils-2.27-28.base.el7_5.1.x86_64.rpm | 5.9 MB 00:01 (9/174): bash-4.2.46-30.el7.x86_64.rpm | 1.0 MB 00:01 (10/174): cpio-2.11-27.el7.x86_64.rpm | 211 kB 00:00 (11/174): cpp-4.8.5-28.el7_5.1.x86_64.rpm | 5.9 MB 00:00 (12/174): cracklib-2.9.0-11.el7.x86_64.rpm | 80 kB 00:00 (13/174): curl-7.29.0-46.el7.x86_64.rpm | 268 kB 00:00 (14/174): cryptsetup-libs-1.7.4-4.el7.x86_64.rpm | 223 kB 00:00 (15/174): cracklib-dicts-2.9.0-11.el7.x86_64.rpm | 3.6 MB 00:01 (16/174): cyrus-sasl-lib-2.1.26-23.el7.x86_64.rpm | 155 kB 00:00 (17/174): coreutils-8.22-21.el7.x86_64.rpm | 3.3 MB 00:02 (18/174): dbus-libs-1.10.24-7.el7.x86_64.rpm | 169 kB 00:00 (19/174): diffutils-3.3-4.el7.x86_64.rpm | 322 kB 00:00 (20/174): device-mapper-1.02.146-4.el7.x86_64.rpm | 289 kB 00:00 (21/174): dracut-033-535.el7_5.1.x86_64.rpm | 325 kB 00:00 (22/174): dwz-0.11-3.el7.x86_64.rpm | 99 kB 00:00 (23/174): elfutils-default-yama-scope-0.170-4.el7.noarch.rp | 31 kB 00:00 (24/174): device-mapper-libs-1.02.146-4.el7.x86_64.rpm | 316 kB 00:00 (25/174): dbus-1.10.24-7.el7.x86_64.rpm | 245 kB 00:01 (26/174): elfutils-libelf-0.170-4.el7.x86_64.rpm | 195 kB 00:00 (27/174): elfutils-0.170-4.el7.x86_64.rpm | 282 kB 00:00 warning: /var/lib/mock/827452-epel-7-x86_64-1542810627.471522/root/var/cache/yum/epel/packages/epel-release-7-11.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY Public key for epel-release-7-11.noarch.rpm is not installed (28/174): epel-release-7-11.noarch.rpm | 15 kB 00:00 (29/174): epel-rpm-macros-7-19.noarch.rpm | 13 kB 00:00 (30/174): expat-2.1.0-10.el7_3.x86_64.rpm | 81 kB 00:00 (31/174): file-5.11-33.el7.x86_64.rpm | 57 kB 00:00 (32/174): file-libs-5.11-33.el7.x86_64.rpm | 340 kB 00:00 (33/174): elfutils-libs-0.170-4.el7.x86_64.rpm | 267 kB 00:00 (34/174): filesystem-3.2-25.el7.x86_64.rpm | 1.0 MB 00:00 (35/174): findutils-4.5.11-5.el7.x86_64.rpm | 559 kB 00:00 (36/174): gawk-4.0.2-4.el7_3.1.x86_64.rpm | 874 kB 00:00 (37/174): gdbm-1.10-8.el7.x86_64.rpm | 70 kB 00:00 (38/174): gdb-7.6.1-110.el7.x86_64.rpm | 2.4 MB 00:00 (39/174): gcc-c++-4.8.5-28.el7_5.1.x86_64.rpm | 7.2 MB 00:01 (40/174): glib2-2.54.2-2.el7.x86_64.rpm | 2.4 MB 00:00 (41/174): gcc-4.8.5-28.el7_5.1.x86_64.rpm | 16 MB 00:01 (42/174): glibc-2.17-222.el7.x86_64.rpm | 3.6 MB 00:00 (43/174): glibc-devel-2.17-222.el7.x86_64.rpm | 1.1 MB 00:00 (44/174): glibc-headers-2.17-222.el7.x86_64.rpm | 678 kB 00:00 (45/174): gnupg2-2.0.22-5.el7_5.x86_64.rpm | 1.5 MB 00:00 (46/174): gmp-6.0.0-15.el7.x86_64.rpm | 281 kB 00:00 (47/174): grep-2.20-3.el7.x86_64.rpm | 344 kB 00:00 (48/174): gzip-1.5-10.el7.x86_64.rpm | 130 kB 00:00 (49/174): groff-base-1.22.2-8.el7.x86_64.rpm | 942 kB 00:00 (50/174): hardlink-1.0-19.el7.x86_64.rpm | 14 kB 00:00 (51/174): keyutils-libs-1.5.8-3.el7.x86_64.rpm | 25 kB 00:00 (52/174): info-5.1-5.el7.x86_64.rpm | 233 kB 00:00 (53/174): kmod-20-21.el7.x86_64.rpm | 121 kB 00:00 (54/174): kmod-libs-20-21.el7.x86_64.rpm | 50 kB 00:00 (55/174): kernel-headers-3.10.0-862.14.4.el7.x86_64.rpm | 7.1 MB 00:00 (56/174): libacl-2.2.51-14.el7.x86_64.rpm | 27 kB 00:00 (57/174): krb5-libs-1.15.1-19.el7.x86_64.rpm | 747 kB 00:00 (58/174): kpartx-0.4.9-119.el7_5.1.x86_64.rpm | 76 kB 00:00 (59/174): libassuan-2.1.0-3.el7.x86_64.rpm | 63 kB 00:00 (60/174): libblkid-2.23.2-52.el7_5.1.x86_64.rpm | 178 kB 00:00 (61/174): libattr-2.4.46-13.el7.x86_64.rpm | 18 kB 00:00 (62/174): libcap-2.22-9.el7.x86_64.rpm | 47 kB 00:00 (63/174): libcap-ng-0.7.5-4.el7.x86_64.rpm | 25 kB 00:00 (64/174): libcom_err-1.42.9-12.el7_5.x86_64.rpm | 41 kB 00:00 (65/174): libcurl-7.29.0-46.el7.x86_64.rpm | 220 kB 00:00 (66/174): libdb-utils-5.3.21-24.el7.x86_64.rpm | 132 kB 00:00 (67/174): libdb-5.3.21-24.el7.x86_64.rpm | 720 kB 00:00 (68/174): libffi-3.0.13-18.el7.x86_64.rpm | 30 kB 00:00 (69/174): libgcc-4.8.5-28.el7_5.1.x86_64.rpm | 101 kB 00:00 (70/174): libgcrypt-1.5.3-14.el7.x86_64.rpm | 263 kB 00:00 (71/174): libgpg-error-1.12-3.el7.x86_64.rpm | 87 kB 00:00 (72/174): libmount-2.23.2-52.el7_5.1.x86_64.rpm | 180 kB 00:00 (73/174): libidn-1.28-4.el7.x86_64.rpm | 209 kB 00:00 (74/174): libmpc-1.0.1-3.el7.x86_64.rpm | 51 kB 00:00 (75/174): libgomp-4.8.5-28.el7_5.1.x86_64.rpm | 156 kB 00:00 (76/174): libpwquality-1.2.3-5.el7.x86_64.rpm | 85 kB 00:00 (77/174): libselinux-2.5-12.el7.x86_64.rpm | 162 kB 00:00 (78/174): libsemanage-2.5-11.el7.x86_64.rpm | 150 kB 00:00 (79/174): libsepol-2.5-8.1.el7.x86_64.rpm | 297 kB 00:00 (80/174): libssh2-1.4.3-10.el7_2.1.x86_64.rpm | 134 kB 00:00 (81/174): libstdc++-4.8.5-28.el7_5.1.x86_64.rpm | 303 kB 00:00 (82/174): libtasn1-4.10-1.el7.x86_64.rpm | 320 kB 00:00 (83/174): libutempter-1.1.6-4.el7.x86_64.rpm | 25 kB 00:00 (84/174): libuuid-2.23.2-52.el7_5.1.x86_64.rpm | 81 kB 00:00 (85/174): libuser-0.60-9.el7.x86_64.rpm | 400 kB 00:00 (86/174): libverto-0.2.5-4.el7.x86_64.rpm | 16 kB 00:00 (87/174): glibc-common-2.17-222.el7.x86_64.rpm | 11 MB 00:04 (88/174): lua-5.1.4-15.el7.x86_64.rpm | 201 kB 00:00 (89/174): libstdc++-devel-4.8.5-28.el7_5.1.x86_64.rpm | 1.5 MB 00:00 (90/174): libxml2-2.9.1-6.el7_2.3.x86_64.rpm | 668 kB 00:00 (91/174): make-3.82-23.el7.x86_64.rpm | 420 kB 00:00 (92/174): lz4-1.7.5-2.el7.x86_64.rpm | 98 kB 00:00 (93/174): mpfr-3.1.1-4.el7.x86_64.rpm | 203 kB 00:00 (94/174): nspr-4.19.0-1.el7_5.x86_64.rpm | 127 kB 00:00 (95/174): ncurses-base-5.9-14.20130511.el7_4.noarch.rpm | 68 kB 00:00 (96/174): ncurses-5.9-14.20130511.el7_4.x86_64.rpm | 304 kB 00:00 (97/174): nss-3.36.0-7.el7_5.x86_64.rpm | 835 kB 00:00 (98/174): nss-pem-1.0.3-4.el7.x86_64.rpm | 73 kB 00:00 (99/174): nss-softokn-freebl-3.36.0-5.el7_5.x86_64.rpm | 222 kB 00:00 (100/174): nss-sysinit-3.36.0-7.el7_5.x86_64.rpm | 62 kB 00:00 (101/174): nss-tools-3.36.0-7.el7_5.x86_64.rpm | 515 kB 00:00 (102/174): nss-util-3.36.0-1.el7_5.x86_64.rpm | 78 kB 00:00 (103/174): openldap-2.4.44-15.el7_5.x86_64.rpm | 355 kB 00:00 (104/174): nss-softokn-3.36.0-5.el7_5.x86_64.rpm | 315 kB 00:00 (105/174): ncurses-libs-5.9-14.20130511.el7_4.x86_64.rpm | 316 kB 00:00 (106/174): p11-kit-0.23.5-3.el7.x86_64.rpm | 252 kB 00:00 (107/174): openssl-libs-1.0.2k-12.el7.x86_64.rpm | 1.2 MB 00:00 (108/174): patch-2.7.1-10.el7_5.x86_64.rpm | 110 kB 00:00 (109/174): p11-kit-trust-0.23.5-3.el7.x86_64.rpm | 129 kB 00:00 (110/174): pcre-8.32-17.el7.x86_64.rpm | 422 kB 00:00 (111/174): perl-Carp-1.26-244.el7.noarch.rpm | 19 kB 00:00 (112/174): pam-1.1.8-22.el7.x86_64.rpm | 720 kB 00:01 (113/174): perl-Encode-2.51-7.el7.x86_64.rpm | 1.5 MB 00:00 (114/174): perl-Exporter-5.68-3.el7.noarch.rpm | 28 kB 00:00 (115/174): perl-5.16.3-292.el7.x86_64.rpm | 8.0 MB 00:01 (116/174): perl-File-Temp-0.23.01-3.el7.noarch.rpm | 56 kB 00:00 (117/174): perl-File-Path-2.09-2.el7.noarch.rpm | 26 kB 00:00 (118/174): perl-Getopt-Long-2.40-3.el7.noarch.rpm | 56 kB 00:00 (119/174): perl-Filter-1.49-3.el7.x86_64.rpm | 76 kB 00:00 (120/174): perl-HTTP-Tiny-0.033-3.el7.noarch.rpm | 38 kB 00:00 (121/174): perl-Pod-Escapes-1.04-292.el7.noarch.rpm | 51 kB 00:00 (122/174): perl-Pod-Perldoc-3.20-4.el7.noarch.rpm | 87 kB 00:00 (123/174): perl-Pod-Usage-1.63-3.el7.noarch.rpm | 27 kB 00:00 (124/174): perl-Pod-Simple-3.28-4.el7.noarch.rpm | 216 kB 00:00 (125/174): perl-PathTools-3.40-5.el7.x86_64.rpm | 82 kB 00:00 (126/174): perl-Scalar-List-Utils-1.27-248.el7.x86_64.rpm | 36 kB 00:00 (127/174): perl-Socket-2.010-4.el7.x86_64.rpm | 49 kB 00:00 (128/174): perl-Thread-Queue-3.02-2.el7.noarch.rpm | 17 kB 00:00 (129/174): perl-Text-ParseWords-3.29-4.el7.noarch.rpm | 14 kB 00:00 (130/174): perl-Storable-2.45-3.el7.x86_64.rpm | 77 kB 00:00 (131/174): perl-Time-HiRes-1.9725-3.el7.x86_64.rpm | 45 kB 00:00 (132/174): perl-Time-Local-1.2300-2.el7.noarch.rpm | 24 kB 00:00 (133/174): perl-macros-5.16.3-292.el7.x86_64.rpm | 43 kB 00:00 (134/174): perl-parent-0.225-244.el7.noarch.rpm | 12 kB 00:00 (135/174): perl-constant-1.27-2.el7.noarch.rpm | 19 kB 00:00 (136/174): perl-podlators-2.5.1-3.el7.noarch.rpm | 112 kB 00:00 (137/174): perl-srpm-macros-1-8.el7.noarch.rpm | 4.6 kB 00:00 (138/174): perl-libs-5.16.3-292.el7.x86_64.rpm | 688 kB 00:00 (139/174): perl-threads-shared-1.43-6.el7.x86_64.rpm | 39 kB 00:00 (140/174): pinentry-0.8.1-17.el7.x86_64.rpm | 73 kB 00:00 (141/174): pkgconfig-0.27.1-4.el7.x86_64.rpm | 54 kB 00:00 (142/174): popt-1.13-16.el7.x86_64.rpm | 42 kB 00:00 (143/174): perl-threads-1.87-4.el7.x86_64.rpm | 49 kB 00:00 (144/174): python-rpm-macros-3-22.el7.noarch.rpm | 7.5 kB 00:00 (145/174): python-srpm-macros-3-22.el7.noarch.rpm | 7.0 kB 00:00 (146/174): python2-rpm-macros-3-22.el7.noarch.rpm | 6.3 kB 00:00 (147/174): pth-2.0.7-23.el7.x86_64.rpm | 89 kB 00:00 (148/174): qrencode-libs-3.4.1-3.el7.x86_64.rpm | 50 kB 00:00 (149/174): procps-ng-3.3.10-17.el7_5.2.x86_64.rpm | 290 kB 00:00 (150/174): readline-6.2-10.el7.x86_64.rpm | 193 kB 00:00 (151/174): redhat-rpm-config-9.1.0-80.el7.centos.noarch.rpm | 79 kB 00:00 (152/174): rpm-build-4.11.3-32.el7.x86_64.rpm | 147 kB 00:00 (153/174): rpm-build-libs-4.11.3-32.el7.x86_64.rpm | 105 kB 00:00 (154/174): sed-4.2.2-5.el7.x86_64.rpm | 231 kB 00:00 (155/174): rpm-libs-4.11.3-32.el7.x86_64.rpm | 276 kB 00:00 (156/174): setup-2.8.71-9.el7.noarch.rpm | 166 kB 00:00 (157/174): python-libs-2.7.5-69.el7_5.x86_64.rpm | 5.6 MB 00:01 (158/174): shadow-utils-4.1.5.1-24.el7.x86_64.rpm | 1.1 MB 00:00 (159/174): shared-mime-info-1.8-4.el7.x86_64.rpm | 312 kB 00:00 (160/174): rpm-4.11.3-32.el7.x86_64.rpm | 1.2 MB 00:01 (161/174): sqlite-3.7.17-8.el7.x86_64.rpm | 393 kB 00:00 (162/174): systemd-219-57.el7_5.3.x86_64.rpm | 5.0 MB 00:00 (163/174): tzdata-2018f-2.el7.noarch.rpm | 484 kB 00:00 (164/174): systemd-libs-219-57.el7_5.3.x86_64.rpm | 402 kB 00:00 (165/174): unzip-6.0-19.el7.x86_64.rpm | 170 kB 00:00 (166/174): which-2.20-7.el7.x86_64.rpm | 41 kB 00:00 (167/174): ustr-1.0.4-16.el7.x86_64.rpm | 92 kB 00:00 (168/174): util-linux-2.23.2-52.el7_5.1.x86_64.rpm | 2.0 MB 00:00 (169/174): xz-5.2.2-1.el7.x86_64.rpm | 229 kB 00:00 (170/174): xz-libs-5.2.2-1.el7.x86_64.rpm | 103 kB 00:00 (171/174): zlib-1.2.7-17.el7.x86_64.rpm | 90 kB 00:00 (172/174): zip-3.0-11.el7.x86_64.rpm | 260 kB 00:00 (173/174): tar-1.26-34.el7.x86_64.rpm | 845 kB 00:01 bzip2-libs-1.0.6-13.el7.x86_64 FAILED http://mirrors.cmich.edu/centos/7.5.1804/os/x86_64/Packages/bzip2-libs-1.0.6-13.el7.x86_64.rpm: [Errno 12] Timeout on http://mirrors.cmich.edu/centos/7.5.1804/os/x86_64/Packages/bzip2-libs-1.0.6-13.el7.x86_64.rpm: (28, 'Operation too slow. Less than 1000 bytes/sec transferred the last 30 seconds') Trying other mirror. (174/174): bzip2-libs-1.0.6-13.el7.x86_64.rpm | 40 kB 00:00 -------------------------------------------------------------------------------- Total 4.0 MB/s | 128 MB 00:31 Retrieving key from file:///usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7 Importing GPG key 0xF4A80EB5: Userid : "CentOS-7 Key (CentOS 7 Official Signing Key) " Fingerprint: 6341 ab27 53d7 8a78 a7c2 7bb1 24c6 a8a7 f4a8 0eb5 From : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7 Retrieving key from file:///usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7 Importing GPG key 0x352C64E5: Userid : "Fedora EPEL (7) " Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5 From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : libgcc-4.8.5-28.el7_5.1.x86_64 1/174 Installing : python-srpm-macros-3-22.el7.noarch 2/174 Installing : python-rpm-macros-3-22.el7.noarch 3/174 Installing : python2-rpm-macros-3-22.el7.noarch 4/174 Installing : tzdata-2018f-2.el7.noarch 5/174 Installing : ncurses-base-5.9-14.20130511.el7_4.noarch 6/174 Installing : chkconfig-1.7.4-1.el7.x86_64 7/174 Installing : glibc-common-2.17-222.el7.x86_64 8/174 Installing : nss-softokn-freebl-3.36.0-5.el7_5.x86_64 9/174 Installing : bash-4.2.46-30.el7.x86_64 10/174 Installing : ncurses-5.9-14.20130511.el7_4.x86_64 11/174 Installing : setup-2.8.71-9.el7.noarch 12/174 warning: /etc/hosts created as /etc/hosts.rpmnew Installing : filesystem-3.2-25.el7.x86_64 13/174 Installing : basesystem-10.0-7.el7.centos.noarch 14/174 Installing : glibc-2.17-222.el7.x86_64 15/174 Installing : zlib-1.2.7-17.el7.x86_64 16/174 Installing : nspr-4.19.0-1.el7_5.x86_64 17/174 Installing : nss-util-3.36.0-1.el7_5.x86_64 18/174 Installing : libstdc++-4.8.5-28.el7_5.1.x86_64 19/174 Installing : ncurses-libs-5.9-14.20130511.el7_4.x86_64 20/174 Installing : info-5.1-5.el7.x86_64 21/174 Installing : 1:gmp-6.0.0-15.el7.x86_64 22/174 Installing : popt-1.13-16.el7.x86_64 23/174 Installing : libattr-2.4.46-13.el7.x86_64 24/174 Installing : libacl-2.2.51-14.el7.x86_64 25/174 Installing : libcap-2.22-9.el7.x86_64 26/174 Installing : libcom_err-1.42.9-12.el7_5.x86_64 27/174 Installing : libffi-3.0.13-18.el7.x86_64 28/174 Installing : libsepol-2.5-8.1.el7.x86_64 29/174 Installing : gawk-4.0.2-4.el7_3.1.x86_64 30/174 Installing : pcre-8.32-17.el7.x86_64 31/174 Installing : libselinux-2.5-12.el7.x86_64 32/174 Installing : sed-4.2.2-5.el7.x86_64 33/174 Installing : grep-2.20-3.el7.x86_64 34/174 Installing : p11-kit-0.23.5-3.el7.x86_64 35/174 Installing : libverto-0.2.5-4.el7.x86_64 36/174 Installing : libtasn1-4.10-1.el7.x86_64 37/174 Installing : p11-kit-trust-0.23.5-3.el7.x86_64 38/174 Installing : ca-certificates-2018.2.22-70.0.el7_5.noarch 39/174 Installing : keyutils-libs-1.5.8-3.el7.x86_64 40/174 Installing : centos-release-7-5.1804.5.el7.centos.x86_64 41/174 Installing : coreutils-8.22-21.el7.x86_64 42/174 Installing : 1:openssl-libs-1.0.2k-12.el7.x86_64 43/174 Installing : krb5-libs-1.15.1-19.el7.x86_64 44/174 Installing : bzip2-libs-1.0.6-13.el7.x86_64 45/174 Installing : xz-libs-5.2.2-1.el7.x86_64 46/174 Installing : elfutils-libelf-0.170-4.el7.x86_64 47/174 Installing : libdb-5.3.21-24.el7.x86_64 48/174 Installing : readline-6.2-10.el7.x86_64 49/174 Installing : libgpg-error-1.12-3.el7.x86_64 50/174 Installing : libgcrypt-1.5.3-14.el7.x86_64 51/174 Installing : lua-5.1.4-15.el7.x86_64 52/174 Installing : gzip-1.5-10.el7.x86_64 53/174 Installing : mpfr-3.1.1-4.el7.x86_64 54/174 Installing : libuuid-2.23.2-52.el7_5.1.x86_64 55/174 Installing : libblkid-2.23.2-52.el7_5.1.x86_64 56/174 Installing : libmount-2.23.2-52.el7_5.1.x86_64 57/174 Installing : libmpc-1.0.1-3.el7.x86_64 58/174 Installing : cracklib-2.9.0-11.el7.x86_64 59/174 Installing : xz-5.2.2-1.el7.x86_64 60/174 Installing : binutils-2.27-28.base.el7_5.1.x86_64 61/174 Installing : 1:findutils-4.5.11-5.el7.x86_64 62/174 Installing : cpio-2.11-27.el7.x86_64 63/174 Installing : diffutils-3.3-4.el7.x86_64 64/174 Installing : file-libs-5.11-33.el7.x86_64 65/174 Installing : expat-2.1.0-10.el7_3.x86_64 66/174 Installing : libcap-ng-0.7.5-4.el7.x86_64 67/174 Installing : audit-libs-2.8.1-3.el7_5.1.x86_64 68/174 Installing : cracklib-dicts-2.9.0-11.el7.x86_64 69/174 Installing : libpwquality-1.2.3-5.el7.x86_64 70/174 Installing : pam-1.1.8-22.el7.x86_64 71/174 Installing : sqlite-3.7.17-8.el7.x86_64 72/174 Installing : nss-softokn-3.36.0-5.el7_5.x86_64 73/174 Installing : nss-pem-1.0.3-4.el7.x86_64 74/174 Installing : nss-sysinit-3.36.0-7.el7_5.x86_64 75/174 Installing : nss-3.36.0-7.el7_5.x86_64 76/174 Installing : 2:tar-1.26-34.el7.x86_64 77/174 Installing : lz4-1.7.5-2.el7.x86_64 78/174 Installing : gdbm-1.10-8.el7.x86_64 79/174 Installing : python-libs-2.7.5-69.el7_5.x86_64 80/174 Installing : gdb-7.6.1-110.el7.x86_64 81/174 Installing : nss-tools-3.36.0-7.el7_5.x86_64 82/174 Installing : file-5.11-33.el7.x86_64 83/174 Installing : cpp-4.8.5-28.el7_5.1.x86_64 84/174 Installing : libassuan-2.1.0-3.el7.x86_64 85/174 Installing : libdb-utils-5.3.21-24.el7.x86_64 86/174 Installing : cyrus-sasl-lib-2.1.26-23.el7.x86_64 87/174 Installing : dwz-0.11-3.el7.x86_64 88/174 Installing : libxml2-2.9.1-6.el7_2.3.x86_64 89/174 Installing : glib2-2.54.2-2.el7.x86_64 90/174 Installing : shared-mime-info-1.8-4.el7.x86_64 91/174 Installing : 1:pkgconfig-0.27.1-4.el7.x86_64 92/174 Installing : kmod-libs-20-21.el7.x86_64 93/174 Installing : bzip2-1.0.6-13.el7.x86_64 94/174 Installing : unzip-6.0-19.el7.x86_64 95/174 Installing : zip-3.0-11.el7.x86_64 96/174 Installing : libssh2-1.4.3-10.el7_2.1.x86_64 97/174 Installing : groff-base-1.22.2-8.el7.x86_64 98/174 Installing : 1:perl-parent-0.225-244.el7.noarch 99/174 Installing : perl-HTTP-Tiny-0.033-3.el7.noarch 100/174 Installing : perl-podlators-2.5.1-3.el7.noarch 101/174 Installing : perl-Pod-Perldoc-3.20-4.el7.noarch 102/174 Installing : 1:perl-Pod-Escapes-1.04-292.el7.noarch 103/174 Installing : perl-Text-ParseWords-3.29-4.el7.noarch 104/174 Installing : perl-Encode-2.51-7.el7.x86_64 105/174 Installing : perl-Pod-Usage-1.63-3.el7.noarch 106/174 Installing : 4:perl-libs-5.16.3-292.el7.x86_64 107/174 Installing : 4:perl-macros-5.16.3-292.el7.x86_64 108/174 Installing : perl-Socket-2.010-4.el7.x86_64 109/174 Installing : 4:perl-Time-HiRes-1.9725-3.el7.x86_64 110/174 Installing : perl-threads-1.87-4.el7.x86_64 111/174 Installing : perl-Storable-2.45-3.el7.x86_64 112/174 Installing : perl-Carp-1.26-244.el7.noarch 113/174 Installing : perl-Filter-1.49-3.el7.x86_64 114/174 Installing : perl-Exporter-5.68-3.el7.noarch 115/174 Installing : perl-constant-1.27-2.el7.noarch 116/174 Installing : perl-Time-Local-1.2300-2.el7.noarch 117/174 Installing : perl-threads-shared-1.43-6.el7.x86_64 118/174 Installing : perl-File-Temp-0.23.01-3.el7.noarch 119/174 Installing : perl-File-Path-2.09-2.el7.noarch 120/174 Installing : perl-PathTools-3.40-5.el7.x86_64 121/174 Installing : perl-Scalar-List-Utils-1.27-248.el7.x86_64 122/174 Installing : 1:perl-Pod-Simple-3.28-4.el7.noarch 123/174 Installing : perl-Getopt-Long-2.40-3.el7.noarch 124/174 Installing : 4:perl-5.16.3-292.el7.x86_64 125/174 Installing : perl-Thread-Queue-3.02-2.el7.noarch 126/174 Installing : patch-2.7.1-10.el7_5.x86_64 127/174 Installing : acl-2.2.51-14.el7.x86_64 128/174 Installing : libgomp-4.8.5-28.el7_5.1.x86_64 129/174 Installing : libidn-1.28-4.el7.x86_64 130/174 Installing : libcurl-7.29.0-46.el7.x86_64 131/174 Installing : curl-7.29.0-46.el7.x86_64 132/174 Installing : rpm-libs-4.11.3-32.el7.x86_64 133/174 Installing : rpm-4.11.3-32.el7.x86_64 134/174 Installing : openldap-2.4.44-15.el7_5.x86_64 135/174 Installing : libuser-0.60-9.el7.x86_64 136/174 Installing : pinentry-0.8.1-17.el7.x86_64 137/174 Installing : libstdc++-devel-4.8.5-28.el7_5.1.x86_64 138/174 Installing : pth-2.0.7-23.el7.x86_64 139/174 Installing : gnupg2-2.0.22-5.el7_5.x86_64 140/174 Installing : rpm-build-libs-4.11.3-32.el7.x86_64 141/174 Installing : ustr-1.0.4-16.el7.x86_64 142/174 Installing : libsemanage-2.5-11.el7.x86_64 143/174 Installing : 2:shadow-utils-4.1.5.1-24.el7.x86_64 144/174 Installing : libutempter-1.1.6-4.el7.x86_64 145/174 Installing : 1:hardlink-1.0-19.el7.x86_64 146/174 Installing : qrencode-libs-3.4.1-3.el7.x86_64 147/174 Installing : kpartx-0.4.9-119.el7_5.1.x86_64 148/174 Installing : 7:device-mapper-1.02.146-4.el7.x86_64 149/174 Installing : util-linux-2.23.2-52.el7_5.1.x86_64 150/174 Installing : procps-ng-3.3.10-17.el7_5.2.x86_64 151/174 Installing : 7:device-mapper-libs-1.02.146-4.el7.x86_64 152/174 Installing : cryptsetup-libs-1.7.4-4.el7.x86_64 153/174 Installing : dracut-033-535.el7_5.1.x86_64 154/174 Installing : kmod-20-21.el7.x86_64 155/174 Installing : elfutils-libs-0.170-4.el7.x86_64 156/174 Installing : systemd-libs-219-57.el7_5.3.x86_64 157/174 Installing : 1:dbus-libs-1.10.24-7.el7.x86_64 158/174 Installing : systemd-219-57.el7_5.3.x86_64 159/174 Running in chroot, ignoring request. Installing : 1:dbus-1.10.24-7.el7.x86_64 160/174 Installing : elfutils-default-yama-scope-0.170-4.el7.noarch 161/174 Installing : elfutils-0.170-4.el7.x86_64 162/174 Installing : perl-srpm-macros-1-8.el7.noarch 163/174 Installing : redhat-rpm-config-9.1.0-80.el7.centos.noarch 164/174 Installing : kernel-headers-3.10.0-862.14.4.el7.x86_64 165/174 Installing : glibc-headers-2.17-222.el7.x86_64 166/174 Installing : glibc-devel-2.17-222.el7.x86_64 167/174 Installing : gcc-4.8.5-28.el7_5.1.x86_64 168/174 Installing : gcc-c++-4.8.5-28.el7_5.1.x86_64 169/174 Installing : rpm-build-4.11.3-32.el7.x86_64 170/174 Installing : epel-release-7-11.noarch 171/174 Installing : epel-rpm-macros-7-19.noarch 172/174 Installing : which-2.20-7.el7.x86_64 173/174 Installing : 1:make-3.82-23.el7.x86_64 174/174 Verifying : perl-HTTP-Tiny-0.033-3.el7.noarch 1/174 Verifying : 1:pkgconfig-0.27.1-4.el7.x86_64 2/174 Verifying : glibc-devel-2.17-222.el7.x86_64 3/174 Verifying : pcre-8.32-17.el7.x86_64 4/174 Verifying : nss-tools-3.36.0-7.el7_5.x86_64 5/174 Verifying : libsemanage-2.5-11.el7.x86_64 6/174 Verifying : acl-2.2.51-14.el7.x86_64 7/174 Verifying : pth-2.0.7-23.el7.x86_64 8/174 Verifying : libgomp-4.8.5-28.el7_5.1.x86_64 9/174 Verifying : epel-release-7-11.noarch 10/174 Verifying : which-2.20-7.el7.x86_64 11/174 Verifying : gcc-4.8.5-28.el7_5.1.x86_64 12/174 Verifying : groff-base-1.22.2-8.el7.x86_64 13/174 Verifying : perl-File-Temp-0.23.01-3.el7.noarch 14/174 Verifying : python-rpm-macros-3-22.el7.noarch 15/174 Verifying : nss-pem-1.0.3-4.el7.x86_64 16/174 Verifying : file-libs-5.11-33.el7.x86_64 17/174 Verifying : perl-Socket-2.010-4.el7.x86_64 18/174 Verifying : p11-kit-0.23.5-3.el7.x86_64 19/174 Verifying : dracut-033-535.el7_5.1.x86_64 20/174 Verifying : 1:make-3.82-23.el7.x86_64 21/174 Verifying : 1:perl-Pod-Escapes-1.04-292.el7.noarch 22/174 Verifying : kernel-headers-3.10.0-862.14.4.el7.x86_64 23/174 Verifying : systemd-libs-219-57.el7_5.3.x86_64 24/174 Verifying : libcom_err-1.42.9-12.el7_5.x86_64 25/174 Verifying : nss-sysinit-3.36.0-7.el7_5.x86_64 26/174 Verifying : cracklib-dicts-2.9.0-11.el7.x86_64 27/174 Verifying : 7:device-mapper-1.02.146-4.el7.x86_64 28/174 Verifying : perl-File-Path-2.09-2.el7.noarch 29/174 Verifying : libselinux-2.5-12.el7.x86_64 30/174 Verifying : libassuan-2.1.0-3.el7.x86_64 31/174 Verifying : gdb-7.6.1-110.el7.x86_64 32/174 Verifying : perl-Text-ParseWords-3.29-4.el7.noarch 33/174 Verifying : chkconfig-1.7.4-1.el7.x86_64 34/174 Verifying : ustr-1.0.4-16.el7.x86_64 35/174 Verifying : lua-5.1.4-15.el7.x86_64 36/174 Verifying : centos-release-7-5.1804.5.el7.centos.x86_64 37/174 Verifying : openldap-2.4.44-15.el7_5.x86_64 38/174 Verifying : libutempter-1.1.6-4.el7.x86_64 39/174 Verifying : 7:device-mapper-libs-1.02.146-4.el7.x86_64 40/174 Verifying : util-linux-2.23.2-52.el7_5.1.x86_64 41/174 Verifying : libffi-3.0.13-18.el7.x86_64 42/174 Verifying : setup-2.8.71-9.el7.noarch 43/174 Verifying : 4:perl-Time-HiRes-1.9725-3.el7.x86_64 44/174 Verifying : ncurses-libs-5.9-14.20130511.el7_4.x86_64 45/174 Verifying : 1:openssl-libs-1.0.2k-12.el7.x86_64 46/174 Verifying : kpartx-0.4.9-119.el7_5.1.x86_64 47/174 Verifying : nss-util-3.36.0-1.el7_5.x86_64 48/174 Verifying : bzip2-1.0.6-13.el7.x86_64 49/174 Verifying : python-srpm-macros-3-22.el7.noarch 50/174 Verifying : basesystem-10.0-7.el7.centos.noarch 51/174 Verifying : libverto-0.2.5-4.el7.x86_64 52/174 Verifying : readline-6.2-10.el7.x86_64 53/174 Verifying : 4:perl-libs-5.16.3-292.el7.x86_64 54/174 Verifying : glibc-2.17-222.el7.x86_64 55/174 Verifying : info-5.1-5.el7.x86_64 56/174 Verifying : libcurl-7.29.0-46.el7.x86_64 57/174 Verifying : unzip-6.0-19.el7.x86_64 58/174 Verifying : libuuid-2.23.2-52.el7_5.1.x86_64 59/174 Verifying : libgcc-4.8.5-28.el7_5.1.x86_64 60/174 Verifying : rpm-build-4.11.3-32.el7.x86_64 61/174 Verifying : bzip2-libs-1.0.6-13.el7.x86_64 62/174 Verifying : lz4-1.7.5-2.el7.x86_64 63/174 Verifying : bash-4.2.46-30.el7.x86_64 64/174 Verifying : 2:shadow-utils-4.1.5.1-24.el7.x86_64 65/174 Verifying : libmpc-1.0.1-3.el7.x86_64 66/174 Verifying : coreutils-8.22-21.el7.x86_64 67/174 Verifying : libsepol-2.5-8.1.el7.x86_64 68/174 Verifying : perl-Pod-Usage-1.63-3.el7.noarch 69/174 Verifying : gcc-c++-4.8.5-28.el7_5.1.x86_64 70/174 Verifying : 4:perl-5.16.3-292.el7.x86_64 71/174 Verifying : perl-Encode-2.51-7.el7.x86_64 72/174 Verifying : nss-softokn-3.36.0-5.el7_5.x86_64 73/174 Verifying : ca-certificates-2018.2.22-70.0.el7_5.noarch 74/174 Verifying : sqlite-3.7.17-8.el7.x86_64 75/174 Verifying : libuser-0.60-9.el7.x86_64 76/174 Verifying : rpm-build-libs-4.11.3-32.el7.x86_64 77/174 Verifying : perl-threads-1.87-4.el7.x86_64 78/174 Verifying : 1:hardlink-1.0-19.el7.x86_64 79/174 Verifying : cracklib-2.9.0-11.el7.x86_64 80/174 Verifying : libgpg-error-1.12-3.el7.x86_64 81/174 Verifying : perl-Getopt-Long-2.40-3.el7.noarch 82/174 Verifying : rpm-4.11.3-32.el7.x86_64 83/174 Verifying : gnupg2-2.0.22-5.el7_5.x86_64 84/174 Verifying : file-5.11-33.el7.x86_64 85/174 Verifying : popt-1.13-16.el7.x86_64 86/174 Verifying : gzip-1.5-10.el7.x86_64 87/174 Verifying : libdb-utils-5.3.21-24.el7.x86_64 88/174 Verifying : curl-7.29.0-46.el7.x86_64 89/174 Verifying : perl-threads-shared-1.43-6.el7.x86_64 90/174 Verifying : perl-Storable-2.45-3.el7.x86_64 91/174 Verifying : qrencode-libs-3.4.1-3.el7.x86_64 92/174 Verifying : 4:perl-macros-5.16.3-292.el7.x86_64 93/174 Verifying : cpio-2.11-27.el7.x86_64 94/174 Verifying : libattr-2.4.46-13.el7.x86_64 95/174 Verifying : libidn-1.28-4.el7.x86_64 96/174 Verifying : gawk-4.0.2-4.el7_3.1.x86_64 97/174 Verifying : 1:perl-parent-0.225-244.el7.noarch 98/174 Verifying : perl-srpm-macros-1-8.el7.noarch 99/174 Verifying : kmod-20-21.el7.x86_64 100/174 Verifying : python-libs-2.7.5-69.el7_5.x86_64 101/174 Verifying : elfutils-0.170-4.el7.x86_64 102/174 Verifying : elfutils-libs-0.170-4.el7.x86_64 103/174 Verifying : redhat-rpm-config-9.1.0-80.el7.centos.noarch 104/174 Verifying : grep-2.20-3.el7.x86_64 105/174 Verifying : libdb-5.3.21-24.el7.x86_64 106/174 Verifying : filesystem-3.2-25.el7.x86_64 107/174 Verifying : perl-Carp-1.26-244.el7.noarch 108/174 Verifying : libssh2-1.4.3-10.el7_2.1.x86_64 109/174 Verifying : 1:dbus-libs-1.10.24-7.el7.x86_64 110/174 Verifying : gdbm-1.10-8.el7.x86_64 111/174 Verifying : cpp-4.8.5-28.el7_5.1.x86_64 112/174 Verifying : systemd-219-57.el7_5.3.x86_64 113/174 Verifying : patch-2.7.1-10.el7_5.x86_64 114/174 Verifying : glibc-common-2.17-222.el7.x86_64 115/174 Verifying : xz-libs-5.2.2-1.el7.x86_64 116/174 Verifying : binutils-2.27-28.base.el7_5.1.x86_64 117/174 Verifying : procps-ng-3.3.10-17.el7_5.2.x86_64 118/174 Verifying : perl-podlators-2.5.1-3.el7.noarch 119/174 Verifying : pam-1.1.8-22.el7.x86_64 120/174 Verifying : audit-libs-2.8.1-3.el7_5.1.x86_64 121/174 Verifying : nss-softokn-freebl-3.36.0-5.el7_5.x86_64 122/174 Verifying : libblkid-2.23.2-52.el7_5.1.x86_64 123/174 Verifying : nspr-4.19.0-1.el7_5.x86_64 124/174 Verifying : mpfr-3.1.1-4.el7.x86_64 125/174 Verifying : perl-Filter-1.49-3.el7.x86_64 126/174 Verifying : dwz-0.11-3.el7.x86_64 127/174 Verifying : ncurses-5.9-14.20130511.el7_4.x86_64 128/174 Verifying : ncurses-base-5.9-14.20130511.el7_4.noarch 129/174 Verifying : expat-2.1.0-10.el7_3.x86_64 130/174 Verifying : elfutils-libelf-0.170-4.el7.x86_64 131/174 Verifying : epel-rpm-macros-7-19.noarch 132/174 Verifying : libtasn1-4.10-1.el7.x86_64 133/174 Verifying : perl-Exporter-5.68-3.el7.noarch 134/174 Verifying : perl-constant-1.27-2.el7.noarch 135/174 Verifying : perl-PathTools-3.40-5.el7.x86_64 136/174 Verifying : glibc-headers-2.17-222.el7.x86_64 137/174 Verifying : keyutils-libs-1.5.8-3.el7.x86_64 138/174 Verifying : pinentry-0.8.1-17.el7.x86_64 139/174 Verifying : nss-3.36.0-7.el7_5.x86_64 140/174 Verifying : cryptsetup-libs-1.7.4-4.el7.x86_64 141/174 Verifying : 1:dbus-1.10.24-7.el7.x86_64 142/174 Verifying : shared-mime-info-1.8-4.el7.x86_64 143/174 Verifying : libstdc++-devel-4.8.5-28.el7_5.1.x86_64 144/174 Verifying : perl-Thread-Queue-3.02-2.el7.noarch 145/174 Verifying : 1:perl-Pod-Simple-3.28-4.el7.noarch 146/174 Verifying : perl-Time-Local-1.2300-2.el7.noarch 147/174 Verifying : zlib-1.2.7-17.el7.x86_64 148/174 Verifying : perl-Pod-Perldoc-3.20-4.el7.noarch 149/174 Verifying : libmount-2.23.2-52.el7_5.1.x86_64 150/174 Verifying : libxml2-2.9.1-6.el7_2.3.x86_64 151/174 Verifying : kmod-libs-20-21.el7.x86_64 152/174 Verifying : cyrus-sasl-lib-2.1.26-23.el7.x86_64 153/174 Verifying : libcap-2.22-9.el7.x86_64 154/174 Verifying : xz-5.2.2-1.el7.x86_64 155/174 Verifying : libcap-ng-0.7.5-4.el7.x86_64 156/174 Verifying : 1:gmp-6.0.0-15.el7.x86_64 157/174 Verifying : libacl-2.2.51-14.el7.x86_64 158/174 Verifying : perl-Scalar-List-Utils-1.27-248.el7.x86_64 159/174 Verifying : p11-kit-trust-0.23.5-3.el7.x86_64 160/174 Verifying : krb5-libs-1.15.1-19.el7.x86_64 161/174 Verifying : libgcrypt-1.5.3-14.el7.x86_64 162/174 Verifying : tzdata-2018f-2.el7.noarch 163/174 Verifying : python2-rpm-macros-3-22.el7.noarch 164/174 Verifying : sed-4.2.2-5.el7.x86_64 165/174 Verifying : elfutils-default-yama-scope-0.170-4.el7.noarch 166/174 Verifying : 1:findutils-4.5.11-5.el7.x86_64 167/174 Verifying : glib2-2.54.2-2.el7.x86_64 168/174 Verifying : 2:tar-1.26-34.el7.x86_64 169/174 Verifying : zip-3.0-11.el7.x86_64 170/174 Verifying : libpwquality-1.2.3-5.el7.x86_64 171/174 Verifying : rpm-libs-4.11.3-32.el7.x86_64 172/174 Verifying : libstdc++-4.8.5-28.el7_5.1.x86_64 173/174 Verifying : diffutils-3.3-4.el7.x86_64 174/174 Installed: bash.x86_64 0:4.2.46-30.el7 bzip2.x86_64 0:1.0.6-13.el7 coreutils.x86_64 0:8.22-21.el7 cpio.x86_64 0:2.11-27.el7 diffutils.x86_64 0:3.3-4.el7 epel-release.noarch 0:7-11 epel-rpm-macros.noarch 0:7-19 findutils.x86_64 1:4.5.11-5.el7 gawk.x86_64 0:4.0.2-4.el7_3.1 gcc.x86_64 0:4.8.5-28.el7_5.1 gcc-c++.x86_64 0:4.8.5-28.el7_5.1 grep.x86_64 0:2.20-3.el7 gzip.x86_64 0:1.5-10.el7 info.x86_64 0:5.1-5.el7 make.x86_64 1:3.82-23.el7 patch.x86_64 0:2.7.1-10.el7_5 redhat-rpm-config.noarch 0:9.1.0-80.el7.centos rpm-build.x86_64 0:4.11.3-32.el7 sed.x86_64 0:4.2.2-5.el7 shadow-utils.x86_64 2:4.1.5.1-24.el7 tar.x86_64 2:1.26-34.el7 unzip.x86_64 0:6.0-19.el7 util-linux.x86_64 0:2.23.2-52.el7_5.1 which.x86_64 0:2.20-7.el7 xz.x86_64 0:5.2.2-1.el7 Dependency Installed: acl.x86_64 0:2.2.51-14.el7 audit-libs.x86_64 0:2.8.1-3.el7_5.1 basesystem.noarch 0:10.0-7.el7.centos binutils.x86_64 0:2.27-28.base.el7_5.1 bzip2-libs.x86_64 0:1.0.6-13.el7 ca-certificates.noarch 0:2018.2.22-70.0.el7_5 centos-release.x86_64 0:7-5.1804.5.el7.centos chkconfig.x86_64 0:1.7.4-1.el7 cpp.x86_64 0:4.8.5-28.el7_5.1 cracklib.x86_64 0:2.9.0-11.el7 cracklib-dicts.x86_64 0:2.9.0-11.el7 cryptsetup-libs.x86_64 0:1.7.4-4.el7 curl.x86_64 0:7.29.0-46.el7 cyrus-sasl-lib.x86_64 0:2.1.26-23.el7 dbus.x86_64 1:1.10.24-7.el7 dbus-libs.x86_64 1:1.10.24-7.el7 device-mapper.x86_64 7:1.02.146-4.el7 device-mapper-libs.x86_64 7:1.02.146-4.el7 dracut.x86_64 0:033-535.el7_5.1 dwz.x86_64 0:0.11-3.el7 elfutils.x86_64 0:0.170-4.el7 elfutils-default-yama-scope.noarch 0:0.170-4.el7 elfutils-libelf.x86_64 0:0.170-4.el7 elfutils-libs.x86_64 0:0.170-4.el7 expat.x86_64 0:2.1.0-10.el7_3 file.x86_64 0:5.11-33.el7 file-libs.x86_64 0:5.11-33.el7 filesystem.x86_64 0:3.2-25.el7 gdb.x86_64 0:7.6.1-110.el7 gdbm.x86_64 0:1.10-8.el7 glib2.x86_64 0:2.54.2-2.el7 glibc.x86_64 0:2.17-222.el7 glibc-common.x86_64 0:2.17-222.el7 glibc-devel.x86_64 0:2.17-222.el7 glibc-headers.x86_64 0:2.17-222.el7 gmp.x86_64 1:6.0.0-15.el7 gnupg2.x86_64 0:2.0.22-5.el7_5 groff-base.x86_64 0:1.22.2-8.el7 hardlink.x86_64 1:1.0-19.el7 kernel-headers.x86_64 0:3.10.0-862.14.4.el7 keyutils-libs.x86_64 0:1.5.8-3.el7 kmod.x86_64 0:20-21.el7 kmod-libs.x86_64 0:20-21.el7 kpartx.x86_64 0:0.4.9-119.el7_5.1 krb5-libs.x86_64 0:1.15.1-19.el7 libacl.x86_64 0:2.2.51-14.el7 libassuan.x86_64 0:2.1.0-3.el7 libattr.x86_64 0:2.4.46-13.el7 libblkid.x86_64 0:2.23.2-52.el7_5.1 libcap.x86_64 0:2.22-9.el7 libcap-ng.x86_64 0:0.7.5-4.el7 libcom_err.x86_64 0:1.42.9-12.el7_5 libcurl.x86_64 0:7.29.0-46.el7 libdb.x86_64 0:5.3.21-24.el7 libdb-utils.x86_64 0:5.3.21-24.el7 libffi.x86_64 0:3.0.13-18.el7 libgcc.x86_64 0:4.8.5-28.el7_5.1 libgcrypt.x86_64 0:1.5.3-14.el7 libgomp.x86_64 0:4.8.5-28.el7_5.1 libgpg-error.x86_64 0:1.12-3.el7 libidn.x86_64 0:1.28-4.el7 libmount.x86_64 0:2.23.2-52.el7_5.1 libmpc.x86_64 0:1.0.1-3.el7 libpwquality.x86_64 0:1.2.3-5.el7 libselinux.x86_64 0:2.5-12.el7 libsemanage.x86_64 0:2.5-11.el7 libsepol.x86_64 0:2.5-8.1.el7 libssh2.x86_64 0:1.4.3-10.el7_2.1 libstdc++.x86_64 0:4.8.5-28.el7_5.1 libstdc++-devel.x86_64 0:4.8.5-28.el7_5.1 libtasn1.x86_64 0:4.10-1.el7 libuser.x86_64 0:0.60-9.el7 libutempter.x86_64 0:1.1.6-4.el7 libuuid.x86_64 0:2.23.2-52.el7_5.1 libverto.x86_64 0:0.2.5-4.el7 libxml2.x86_64 0:2.9.1-6.el7_2.3 lua.x86_64 0:5.1.4-15.el7 lz4.x86_64 0:1.7.5-2.el7 mpfr.x86_64 0:3.1.1-4.el7 ncurses.x86_64 0:5.9-14.20130511.el7_4 ncurses-base.noarch 0:5.9-14.20130511.el7_4 ncurses-libs.x86_64 0:5.9-14.20130511.el7_4 nspr.x86_64 0:4.19.0-1.el7_5 nss.x86_64 0:3.36.0-7.el7_5 nss-pem.x86_64 0:1.0.3-4.el7 nss-softokn.x86_64 0:3.36.0-5.el7_5 nss-softokn-freebl.x86_64 0:3.36.0-5.el7_5 nss-sysinit.x86_64 0:3.36.0-7.el7_5 nss-tools.x86_64 0:3.36.0-7.el7_5 nss-util.x86_64 0:3.36.0-1.el7_5 openldap.x86_64 0:2.4.44-15.el7_5 openssl-libs.x86_64 1:1.0.2k-12.el7 p11-kit.x86_64 0:0.23.5-3.el7 p11-kit-trust.x86_64 0:0.23.5-3.el7 pam.x86_64 0:1.1.8-22.el7 pcre.x86_64 0:8.32-17.el7 perl.x86_64 4:5.16.3-292.el7 perl-Carp.noarch 0:1.26-244.el7 perl-Encode.x86_64 0:2.51-7.el7 perl-Exporter.noarch 0:5.68-3.el7 perl-File-Path.noarch 0:2.09-2.el7 perl-File-Temp.noarch 0:0.23.01-3.el7 perl-Filter.x86_64 0:1.49-3.el7 perl-Getopt-Long.noarch 0:2.40-3.el7 perl-HTTP-Tiny.noarch 0:0.033-3.el7 perl-PathTools.x86_64 0:3.40-5.el7 perl-Pod-Escapes.noarch 1:1.04-292.el7 perl-Pod-Perldoc.noarch 0:3.20-4.el7 perl-Pod-Simple.noarch 1:3.28-4.el7 perl-Pod-Usage.noarch 0:1.63-3.el7 perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 perl-Socket.x86_64 0:2.010-4.el7 perl-Storable.x86_64 0:2.45-3.el7 perl-Text-ParseWords.noarch 0:3.29-4.el7 perl-Thread-Queue.noarch 0:3.02-2.el7 perl-Time-HiRes.x86_64 4:1.9725-3.el7 perl-Time-Local.noarch 0:1.2300-2.el7 perl-constant.noarch 0:1.27-2.el7 perl-libs.x86_64 4:5.16.3-292.el7 perl-macros.x86_64 4:5.16.3-292.el7 perl-parent.noarch 1:0.225-244.el7 perl-podlators.noarch 0:2.5.1-3.el7 perl-srpm-macros.noarch 0:1-8.el7 perl-threads.x86_64 0:1.87-4.el7 perl-threads-shared.x86_64 0:1.43-6.el7 pinentry.x86_64 0:0.8.1-17.el7 pkgconfig.x86_64 1:0.27.1-4.el7 popt.x86_64 0:1.13-16.el7 procps-ng.x86_64 0:3.3.10-17.el7_5.2 pth.x86_64 0:2.0.7-23.el7 python-libs.x86_64 0:2.7.5-69.el7_5 python-rpm-macros.noarch 0:3-22.el7 python-srpm-macros.noarch 0:3-22.el7 python2-rpm-macros.noarch 0:3-22.el7 qrencode-libs.x86_64 0:3.4.1-3.el7 readline.x86_64 0:6.2-10.el7 rpm.x86_64 0:4.11.3-32.el7 rpm-build-libs.x86_64 0:4.11.3-32.el7 rpm-libs.x86_64 0:4.11.3-32.el7 setup.noarch 0:2.8.71-9.el7 shared-mime-info.x86_64 0:1.8-4.el7 sqlite.x86_64 0:3.7.17-8.el7 systemd.x86_64 0:219-57.el7_5.3 systemd-libs.x86_64 0:219-57.el7_5.3 tzdata.noarch 0:2018f-2.el7 ustr.x86_64 0:1.0.4-16.el7 xz-libs.x86_64 0:5.2.2-1.el7 zip.x86_64 0:3.0-11.el7 zlib.x86_64 0:1.2.7-17.el7 Complete! Finish: yum install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/pymol-1.7.1-1.20140519svn4076.el7.src.rpm Finish: rpmbuild -bs Finish: buildsrpm INFO: Done(/tmp/tmpqllg6y1o/pymol.spec) Config(child) 1 minutes 38 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running: unbuffer /usr/bin/mock --rebuild /var/lib/copr-rpmbuild/results/pymol-1.7.1-1.20140519svn4076.el7.src.rpm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1542810727.406162 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/var/lib/copr-rpmbuild/results/pymol-1.7.1-1.20140519svn4076.el7.src.rpm) Config(827452-epel-7-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/827452-epel-7-x86_64-1542810727.406162/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: yum update Yum command has been deprecated, use dnf instead. See 'man dnf' and 'man yum2dnf' for more information. https://copr-be.cloud.fedoraproject.org/results/jypelait/pymol/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. base | 3.6 kB 00:00 epel | 3.2 kB 00:00 extras | 3.4 kB 00:00 sclo | 2.9 kB 00:00 sclo-rh | 3.0 kB 00:00 updates | 3.4 kB 00:00 (1/6): epel/primary | 3.6 MB 00:00 (2/6): sclo/primary_db | 294 kB 00:00 (3/6): extras/primary_db | 205 kB 00:00 (4/6): sclo-rh/primary_db | 3.7 MB 00:00 (5/6): updates/primary_db | 6.0 MB 00:01 (6/6): base/primary_db | 5.9 MB 00:13 epel 12708/12708 base/group_gz | 166 kB 00:00 epel/group_gz | 88 kB 00:00 No packages marked for update Finish: yum update Finish: chroot init Start: build phase for pymol-1.7.1-1.20140519svn4076.el7.src.rpm Start: build setup for pymol-1.7.1-1.20140519svn4076.el7.src.rpm sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory sh: /usr/bin/python: No such file or directory warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/pymol-1.7.1-1.20140519svn4076.el7.src.rpm Yum-utils package has been deprecated, use dnf instead. See 'man yum2dnf' for more information. https://copr-be.cloud.fedoraproject.org/results/jypelait/pymol/epel-7-x86_64/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found Trying other mirror. Getting requirements for pymol-1.7.1-1.20140519svn4076.el7.src --> desktop-file-utils-0.23-1.el7.x86_64 --> freeglut-devel-2.8.1-3.el7.x86_64 --> freetype-devel-2.4.11-15.el7.x86_64 --> glew-devel-1.10.0-5.el7.x86_64 --> mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> 2:libpng-devel-1.5.13-7.el7_2.x86_64 --> python-devel-2.7.5-69.el7_5.x86_64 --> python-setuptools-0.9.8-7.el7.noarch --> python2-simplejson-3.10.0-1.el7.x86_64 --> Running transaction check ---> Package desktop-file-utils.x86_64 0:0.23-1.el7 will be installed --> Processing Dependency: emacs-filesystem for package: desktop-file-utils-0.23-1.el7.x86_64 ---> Package freeglut-devel.x86_64 0:2.8.1-3.el7 will be installed --> Processing Dependency: freeglut = 2.8.1-3.el7 for package: freeglut-devel-2.8.1-3.el7.x86_64 --> Processing Dependency: libGLU-devel for package: freeglut-devel-2.8.1-3.el7.x86_64 --> Processing Dependency: libglut.so.3()(64bit) for package: freeglut-devel-2.8.1-3.el7.x86_64 ---> Package freetype-devel.x86_64 0:2.4.11-15.el7 will be installed --> Processing Dependency: freetype = 2.4.11-15.el7 for package: freetype-devel-2.4.11-15.el7.x86_64 --> Processing Dependency: zlib-devel for package: freetype-devel-2.4.11-15.el7.x86_64 --> Processing Dependency: libfreetype.so.6()(64bit) for package: freetype-devel-2.4.11-15.el7.x86_64 ---> Package glew-devel.x86_64 0:1.10.0-5.el7 will be installed --> Processing Dependency: libGLEWmx = 1.10.0-5.el7 for package: glew-devel-1.10.0-5.el7.x86_64 --> Processing Dependency: libGLEW = 1.10.0-5.el7 for package: glew-devel-1.10.0-5.el7.x86_64 --> Processing Dependency: libGLEWmx.so.1.10()(64bit) for package: glew-devel-1.10.0-5.el7.x86_64 --> Processing Dependency: libGLEW.so.1.10()(64bit) for package: glew-devel-1.10.0-5.el7.x86_64 ---> Package libpng-devel.x86_64 2:1.5.13-7.el7_2 will be installed --> Processing Dependency: libpng(x86-64) = 2:1.5.13-7.el7_2 for package: 2:libpng-devel-1.5.13-7.el7_2.x86_64 --> Processing Dependency: libpng15.so.15()(64bit) for package: 2:libpng-devel-1.5.13-7.el7_2.x86_64 ---> Package mesa-libGL-devel.x86_64 0:17.2.3-8.20171019.el7 will be installed --> Processing Dependency: mesa-libGL = 17.2.3-8.20171019.el7 for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xdamage) >= 1.1 for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xcb-glx) >= 1.8.1 for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xcb-dri2) >= 1.8 for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(libdrm) >= 2.4.75 for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xxf86vm) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xfixes) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xext) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(xcb) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(x11-xcb) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: pkgconfig(x11) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: gl-manpages for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: libglapi.so.0()(64bit) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 --> Processing Dependency: libGL.so.1()(64bit) for package: mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 ---> Package python-devel.x86_64 0:2.7.5-69.el7_5 will be installed --> Processing Dependency: python(x86-64) = 2.7.5-69.el7_5 for package: python-devel-2.7.5-69.el7_5.x86_64 --> Processing Dependency: /usr/bin/python2.7 for package: python-devel-2.7.5-69.el7_5.x86_64 ---> Package python-setuptools.noarch 0:0.9.8-7.el7 will be installed --> Processing Dependency: python-backports-ssl_match_hostname for package: python-setuptools-0.9.8-7.el7.noarch ---> Package python2-simplejson.x86_64 0:3.10.0-1.el7 will be installed --> Running transaction check ---> Package emacs-filesystem.noarch 1:24.3-20.el7_4 will be installed ---> Package freeglut.x86_64 0:2.8.1-3.el7 will be installed --> Processing Dependency: libXxf86vm.so.1()(64bit) for package: freeglut-2.8.1-3.el7.x86_64 --> Processing Dependency: libXi.so.6()(64bit) for package: freeglut-2.8.1-3.el7.x86_64 --> Processing Dependency: libXext.so.6()(64bit) for package: freeglut-2.8.1-3.el7.x86_64 --> Processing Dependency: libX11.so.6()(64bit) for package: freeglut-2.8.1-3.el7.x86_64 ---> Package freetype.x86_64 0:2.4.11-15.el7 will be installed ---> Package gl-manpages.noarch 0:1.1-7.20130122.el7 will be installed ---> Package libGLEW.x86_64 0:1.10.0-5.el7 will be installed --> Processing Dependency: libGLU.so.1()(64bit) for package: libGLEW-1.10.0-5.el7.x86_64 ---> Package libGLEWmx.x86_64 0:1.10.0-5.el7 will be installed ---> Package libX11-devel.x86_64 0:1.6.5-1.el7 will be installed --> Processing Dependency: pkgconfig(xproto) for package: libX11-devel-1.6.5-1.el7.x86_64 --> Processing Dependency: pkgconfig(kbproto) for package: libX11-devel-1.6.5-1.el7.x86_64 ---> Package libXdamage-devel.x86_64 0:1.1.4-4.1.el7 will be installed --> Processing Dependency: libXdamage = 1.1.4-4.1.el7 for package: libXdamage-devel-1.1.4-4.1.el7.x86_64 --> Processing Dependency: libXdamage.so.1()(64bit) for package: libXdamage-devel-1.1.4-4.1.el7.x86_64 ---> Package libXext-devel.x86_64 0:1.3.3-3.el7 will be installed ---> Package libXfixes-devel.x86_64 0:5.0.3-1.el7 will be installed --> Processing Dependency: libXfixes = 5.0.3-1.el7 for package: libXfixes-devel-5.0.3-1.el7.x86_64 --> Processing Dependency: libXfixes.so.3()(64bit) for package: libXfixes-devel-5.0.3-1.el7.x86_64 ---> Package libXxf86vm-devel.x86_64 0:1.1.4-1.el7 will be installed ---> Package libdrm-devel.x86_64 0:2.4.83-2.el7 will be installed --> Processing Dependency: libdrm = 2.4.83-2.el7 for package: libdrm-devel-2.4.83-2.el7.x86_64 --> Processing Dependency: libkms.so.1()(64bit) for package: libdrm-devel-2.4.83-2.el7.x86_64 --> Processing Dependency: libdrm_radeon.so.1()(64bit) for package: libdrm-devel-2.4.83-2.el7.x86_64 --> Processing Dependency: libdrm_nouveau.so.2()(64bit) for package: libdrm-devel-2.4.83-2.el7.x86_64 --> Processing Dependency: libdrm_intel.so.1()(64bit) for package: libdrm-devel-2.4.83-2.el7.x86_64 --> Processing Dependency: libdrm_amdgpu.so.1()(64bit) for package: libdrm-devel-2.4.83-2.el7.x86_64 --> Processing Dependency: libdrm.so.2()(64bit) for package: libdrm-devel-2.4.83-2.el7.x86_64 ---> Package libpng.x86_64 2:1.5.13-7.el7_2 will be installed ---> Package libxcb-devel.x86_64 0:1.12-1.el7 will be installed --> Processing Dependency: libxcb(x86-64) = 1.12-1.el7 for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: pkgconfig(xau) >= 0.99.2 for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb.so.1()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xvmc.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xv.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xtest.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xselinux.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xkb.so.1()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xinput.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xinerama.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xfixes.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xf86dri.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-xevie.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-sync.so.1()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-shm.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-shape.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-screensaver.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-res.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-render.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-record.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-randr.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-present.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-glx.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-dri3.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-dri2.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-dpms.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-damage.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 --> Processing Dependency: libxcb-composite.so.0()(64bit) for package: libxcb-devel-1.12-1.el7.x86_64 ---> Package mesa-libGL.x86_64 0:17.2.3-8.20171019.el7 will be installed --> Processing Dependency: libxshmfence.so.1()(64bit) for package: mesa-libGL-17.2.3-8.20171019.el7.x86_64 ---> Package mesa-libGLU-devel.x86_64 0:9.0.0-4.el7 will be installed ---> Package mesa-libglapi.x86_64 0:17.2.3-8.20171019.el7 will be installed ---> Package python.x86_64 0:2.7.5-69.el7_5 will be installed ---> Package python-backports-ssl_match_hostname.noarch 0:3.5.0.1-1.el7 will be installed --> Processing Dependency: python-ipaddress for package: python-backports-ssl_match_hostname-3.5.0.1-1.el7.noarch --> Processing Dependency: python-backports for package: python-backports-ssl_match_hostname-3.5.0.1-1.el7.noarch ---> Package zlib-devel.x86_64 0:1.2.7-17.el7 will be installed --> Running transaction check ---> Package libX11.x86_64 0:1.6.5-1.el7 will be installed --> Processing Dependency: libX11-common >= 1.6.5-1.el7 for package: libX11-1.6.5-1.el7.x86_64 ---> Package libXau-devel.x86_64 0:1.0.8-2.1.el7 will be installed --> Processing Dependency: libXau = 1.0.8-2.1.el7 for package: libXau-devel-1.0.8-2.1.el7.x86_64 --> Processing Dependency: libXau.so.6()(64bit) for package: libXau-devel-1.0.8-2.1.el7.x86_64 ---> Package libXdamage.x86_64 0:1.1.4-4.1.el7 will be installed ---> Package libXext.x86_64 0:1.3.3-3.el7 will be installed ---> Package libXfixes.x86_64 0:5.0.3-1.el7 will be installed ---> Package libXi.x86_64 0:1.7.9-1.el7 will be installed ---> Package libXxf86vm.x86_64 0:1.1.4-1.el7 will be installed ---> Package libdrm.x86_64 0:2.4.83-2.el7 will be installed --> Processing Dependency: libpciaccess.so.0()(64bit) for package: libdrm-2.4.83-2.el7.x86_64 ---> Package libxcb.x86_64 0:1.12-1.el7 will be installed ---> Package libxshmfence.x86_64 0:1.2-1.el7 will be installed ---> Package mesa-libGLU.x86_64 0:9.0.0-4.el7 will be installed ---> Package python-backports.x86_64 0:1.0-8.el7 will be installed ---> Package python-ipaddress.noarch 0:1.0.16-2.el7 will be installed ---> Package xorg-x11-proto-devel.noarch 0:7.7-20.el7 will be installed --> Running transaction check ---> Package libX11-common.noarch 0:1.6.5-1.el7 will be installed ---> Package libXau.x86_64 0:1.0.8-2.1.el7 will be installed ---> Package libpciaccess.x86_64 0:0.14-1.el7 will be installed --> Processing Dependency: hwdata for package: libpciaccess-0.14-1.el7.x86_64 --> Running transaction check ---> Package hwdata.x86_64 0:0.252-8.8.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: desktop-file-utils x86_64 0.23-1.el7 base 67 k freeglut-devel x86_64 2.8.1-3.el7 base 114 k freetype-devel x86_64 2.4.11-15.el7 base 356 k glew-devel x86_64 1.10.0-5.el7 base 172 k libpng-devel x86_64 2:1.5.13-7.el7_2 base 122 k mesa-libGL-devel x86_64 17.2.3-8.20171019.el7 base 157 k python-devel x86_64 2.7.5-69.el7_5 updates 397 k python-setuptools noarch 0.9.8-7.el7 base 397 k python2-simplejson x86_64 3.10.0-1.el7 epel 188 k Installing for dependencies: emacs-filesystem noarch 1:24.3-20.el7_4 base 58 k freeglut x86_64 2.8.1-3.el7 base 182 k freetype x86_64 2.4.11-15.el7 base 392 k gl-manpages noarch 1.1-7.20130122.el7 base 994 k hwdata x86_64 0.252-8.8.el7 base 2.3 M libGLEW x86_64 1.10.0-5.el7 base 134 k libGLEWmx x86_64 1.10.0-5.el7 base 124 k libX11 x86_64 1.6.5-1.el7 base 606 k libX11-common noarch 1.6.5-1.el7 base 164 k libX11-devel x86_64 1.6.5-1.el7 base 980 k libXau x86_64 1.0.8-2.1.el7 base 29 k libXau-devel x86_64 1.0.8-2.1.el7 base 14 k libXdamage x86_64 1.1.4-4.1.el7 base 20 k libXdamage-devel x86_64 1.1.4-4.1.el7 base 9.7 k libXext x86_64 1.3.3-3.el7 base 39 k libXext-devel x86_64 1.3.3-3.el7 base 75 k libXfixes x86_64 5.0.3-1.el7 base 18 k libXfixes-devel x86_64 5.0.3-1.el7 base 13 k libXi x86_64 1.7.9-1.el7 base 40 k libXxf86vm x86_64 1.1.4-1.el7 base 18 k libXxf86vm-devel x86_64 1.1.4-1.el7 base 18 k libdrm x86_64 2.4.83-2.el7 base 151 k libdrm-devel x86_64 2.4.83-2.el7 base 128 k libpciaccess x86_64 0.14-1.el7 base 26 k libpng x86_64 2:1.5.13-7.el7_2 base 213 k libxcb x86_64 1.12-1.el7 base 211 k libxcb-devel x86_64 1.12-1.el7 base 1.0 M libxshmfence x86_64 1.2-1.el7 base 7.2 k mesa-libGL x86_64 17.2.3-8.20171019.el7 base 156 k mesa-libGLU x86_64 9.0.0-4.el7 base 196 k mesa-libGLU-devel x86_64 9.0.0-4.el7 base 9.0 k mesa-libglapi x86_64 17.2.3-8.20171019.el7 base 43 k python x86_64 2.7.5-69.el7_5 updates 93 k python-backports x86_64 1.0-8.el7 base 5.8 k python-backports-ssl_match_hostname noarch 3.5.0.1-1.el7 base 13 k python-ipaddress noarch 1.0.16-2.el7 base 34 k xorg-x11-proto-devel noarch 7.7-20.el7 base 284 k zlib-devel x86_64 1.2.7-17.el7 base 50 k Transaction Summary ================================================================================ Install 9 Packages (+38 Dependent packages) Total download size: 11 M Installed size: 37 M Downloading packages: (1/47): emacs-filesystem-24.3-20.el7_4.noarch.rpm | 58 kB 00:00 (2/47): freeglut-devel-2.8.1-3.el7.x86_64.rpm | 114 kB 00:00 (3/47): gl-manpages-1.1-7.20130122.el7.noarch.rpm | 994 kB 00:00 (4/47): freetype-devel-2.4.11-15.el7.x86_64.rpm | 356 kB 00:00 (5/47): freetype-2.4.11-15.el7.x86_64.rpm | 392 kB 00:00 (6/47): glew-devel-1.10.0-5.el7.x86_64.rpm | 172 kB 00:00 (7/47): libGLEW-1.10.0-5.el7.x86_64.rpm | 134 kB 00:00 (8/47): libGLEWmx-1.10.0-5.el7.x86_64.rpm | 124 kB 00:00 (9/47): libX11-1.6.5-1.el7.x86_64.rpm | 606 kB 00:00 (10/47): libX11-common-1.6.5-1.el7.noarch.rpm | 164 kB 00:00 (11/47): libX11-devel-1.6.5-1.el7.x86_64.rpm | 980 kB 00:00 (12/47): libXau-1.0.8-2.1.el7.x86_64.rpm | 29 kB 00:00 (13/47): libXau-devel-1.0.8-2.1.el7.x86_64.rpm | 14 kB 00:00 (14/47): libXdamage-1.1.4-4.1.el7.x86_64.rpm | 20 kB 00:00 (15/47): libXdamage-devel-1.1.4-4.1.el7.x86_64.rpm | 9.7 kB 00:00 (16/47): libXext-1.3.3-3.el7.x86_64.rpm | 39 kB 00:00 (17/47): hwdata-0.252-8.8.el7.x86_64.rpm | 2.3 MB 00:00 (18/47): libXext-devel-1.3.3-3.el7.x86_64.rpm | 75 kB 00:00 (19/47): libXfixes-5.0.3-1.el7.x86_64.rpm | 18 kB 00:00 (20/47): libXfixes-devel-5.0.3-1.el7.x86_64.rpm | 13 kB 00:00 (21/47): libXi-1.7.9-1.el7.x86_64.rpm | 40 kB 00:00 (22/47): libXxf86vm-1.1.4-1.el7.x86_64.rpm | 18 kB 00:00 (23/47): libXxf86vm-devel-1.1.4-1.el7.x86_64.rpm | 18 kB 00:00 (24/47): libdrm-2.4.83-2.el7.x86_64.rpm | 151 kB 00:00 (25/47): libpciaccess-0.14-1.el7.x86_64.rpm | 26 kB 00:00 (26/47): libdrm-devel-2.4.83-2.el7.x86_64.rpm | 128 kB 00:00 (27/47): libpng-1.5.13-7.el7_2.x86_64.rpm | 213 kB 00:00 (28/47): libpng-devel-1.5.13-7.el7_2.x86_64.rpm | 122 kB 00:00 (29/47): libxcb-1.12-1.el7.x86_64.rpm | 211 kB 00:00 (30/47): libxshmfence-1.2-1.el7.x86_64.rpm | 7.2 kB 00:00 (31/47): libxcb-devel-1.12-1.el7.x86_64.rpm | 1.0 MB 00:00 (32/47): freeglut-2.8.1-3.el7.x86_64.rpm | 182 kB 00:01 (33/47): mesa-libGL-17.2.3-8.20171019.el7.x86_64.rpm | 156 kB 00:00 (34/47): mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64.rpm | 157 kB 00:00 (35/47): mesa-libGLU-9.0.0-4.el7.x86_64.rpm | 196 kB 00:00 (36/47): mesa-libGLU-devel-9.0.0-4.el7.x86_64.rpm | 9.0 kB 00:00 (37/47): mesa-libglapi-17.2.3-8.20171019.el7.x86_64.rpm | 43 kB 00:00 (38/47): python-backports-1.0-8.el7.x86_64.rpm | 5.8 kB 00:00 (39/47): python-backports-ssl_match_hostname-3.5.0.1-1.el7. | 13 kB 00:00 (40/47): python-ipaddress-1.0.16-2.el7.noarch.rpm | 34 kB 00:00 (41/47): python-setuptools-0.9.8-7.el7.noarch.rpm | 397 kB 00:00 (42/47): xorg-x11-proto-devel-7.7-20.el7.noarch.rpm | 284 kB 00:00 (43/47): zlib-devel-1.2.7-17.el7.x86_64.rpm | 50 kB 00:00 (44/47): python2-simplejson-3.10.0-1.el7.x86_64.rpm | 188 kB 00:00 (45/47): python-2.7.5-69.el7_5.x86_64.rpm | 93 kB 00:00 (46/47): python-devel-2.7.5-69.el7_5.x86_64.rpm | 397 kB 00:00 desktop-file-utils-0.23-1.el7. FAILED http://mirrors.cmich.edu/centos/7.5.1804/os/x86_64/Packages/desktop-file-utils-0.23-1.el7.x86_64.rpm: [Errno 12] Timeout on http://mirrors.cmich.edu/centos/7.5.1804/os/x86_64/Packages/desktop-file-utils-0.23-1.el7.x86_64.rpm: (28, 'Operation too slow. Less than 1000 bytes/sec transferred the last 30 seconds') Trying other mirror. (47/47): desktop-file-utils-0.23-1.el7.x86_64.rpm | 67 kB 00:00 -------------------------------------------------------------------------------- Total 349 kB/s | 11 MB 00:31 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : python-2.7.5-69.el7_5.x86_64 1/47 Installing : xorg-x11-proto-devel-7.7-20.el7.noarch 2/47 Installing : libXau-1.0.8-2.1.el7.x86_64 3/47 Installing : libxcb-1.12-1.el7.x86_64 4/47 Installing : gl-manpages-1.1-7.20130122.el7.noarch 5/47 Installing : mesa-libglapi-17.2.3-8.20171019.el7.x86_64 6/47 Installing : zlib-devel-1.2.7-17.el7.x86_64 7/47 Installing : libXau-devel-1.0.8-2.1.el7.x86_64 8/47 Installing : libxcb-devel-1.12-1.el7.x86_64 9/47 Installing : python-ipaddress-1.0.16-2.el7.noarch 10/47 Installing : python-backports-1.0-8.el7.x86_64 11/47 Installing : python-backports-ssl_match_hostname-3.5.0.1-1.el7.noarch 12/47 Installing : hwdata-0.252-8.8.el7.x86_64 13/47 Installing : libpciaccess-0.14-1.el7.x86_64 14/47 Installing : libdrm-2.4.83-2.el7.x86_64 15/47 Installing : libdrm-devel-2.4.83-2.el7.x86_64 16/47 Installing : libxshmfence-1.2-1.el7.x86_64 17/47 Installing : 1:emacs-filesystem-24.3-20.el7_4.noarch 18/47 Installing : libX11-common-1.6.5-1.el7.noarch 19/47 Installing : libX11-1.6.5-1.el7.x86_64 20/47 Installing : libXext-1.3.3-3.el7.x86_64 21/47 Installing : libX11-devel-1.6.5-1.el7.x86_64 22/47 Installing : libXxf86vm-1.1.4-1.el7.x86_64 23/47 Installing : libXfixes-5.0.3-1.el7.x86_64 24/47 Installing : libXfixes-devel-5.0.3-1.el7.x86_64 25/47 Installing : libXdamage-1.1.4-4.1.el7.x86_64 26/47 Installing : mesa-libGL-17.2.3-8.20171019.el7.x86_64 27/47 Installing : mesa-libGLU-9.0.0-4.el7.x86_64 28/47 Installing : libXext-devel-1.3.3-3.el7.x86_64 29/47 Installing : libXxf86vm-devel-1.1.4-1.el7.x86_64 30/47 Installing : libGLEWmx-1.10.0-5.el7.x86_64 31/47 Installing : libGLEW-1.10.0-5.el7.x86_64 32/47 Installing : libXdamage-devel-1.1.4-4.1.el7.x86_64 33/47 Installing : mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 34/47 Installing : mesa-libGLU-devel-9.0.0-4.el7.x86_64 35/47 Installing : libXi-1.7.9-1.el7.x86_64 36/47 Installing : freeglut-2.8.1-3.el7.x86_64 37/47 Installing : freetype-2.4.11-15.el7.x86_64 38/47 Installing : 2:libpng-1.5.13-7.el7_2.x86_64 39/47 Installing : 2:libpng-devel-1.5.13-7.el7_2.x86_64 40/47 Installing : freetype-devel-2.4.11-15.el7.x86_64 41/47 Installing : freeglut-devel-2.8.1-3.el7.x86_64 42/47 Installing : glew-devel-1.10.0-5.el7.x86_64 43/47 Installing : desktop-file-utils-0.23-1.el7.x86_64 44/47 Installing : python-setuptools-0.9.8-7.el7.noarch 45/47 Installing : python2-simplejson-3.10.0-1.el7.x86_64 46/47 Installing : python-devel-2.7.5-69.el7_5.x86_64 47/47 Verifying : libXext-1.3.3-3.el7.x86_64 1/47 Verifying : libX11-1.6.5-1.el7.x86_64 2/47 Verifying : zlib-devel-1.2.7-17.el7.x86_64 3/47 Verifying : python-backports-ssl_match_hostname-3.5.0.1-1.el7.noarch 4/47 Verifying : libpciaccess-0.14-1.el7.x86_64 5/47 Verifying : python2-simplejson-3.10.0-1.el7.x86_64 6/47 Verifying : mesa-libglapi-17.2.3-8.20171019.el7.x86_64 7/47 Verifying : glew-devel-1.10.0-5.el7.x86_64 8/47 Verifying : libXxf86vm-1.1.4-1.el7.x86_64 9/47 Verifying : libXi-1.7.9-1.el7.x86_64 10/47 Verifying : 2:libpng-1.5.13-7.el7_2.x86_64 11/47 Verifying : mesa-libGLU-9.0.0-4.el7.x86_64 12/47 Verifying : freetype-2.4.11-15.el7.x86_64 13/47 Verifying : python-setuptools-0.9.8-7.el7.noarch 14/47 Verifying : libXdamage-devel-1.1.4-4.1.el7.x86_64 15/47 Verifying : mesa-libGLU-devel-9.0.0-4.el7.x86_64 16/47 Verifying : python-ipaddress-1.0.16-2.el7.noarch 17/47 Verifying : libdrm-devel-2.4.83-2.el7.x86_64 18/47 Verifying : libGLEWmx-1.10.0-5.el7.x86_64 19/47 Verifying : gl-manpages-1.1-7.20130122.el7.noarch 20/47 Verifying : mesa-libGL-17.2.3-8.20171019.el7.x86_64 21/47 Verifying : desktop-file-utils-0.23-1.el7.x86_64 22/47 Verifying : 2:libpng-devel-1.5.13-7.el7_2.x86_64 23/47 Verifying : libxcb-1.12-1.el7.x86_64 24/47 Verifying : libXxf86vm-devel-1.1.4-1.el7.x86_64 25/47 Verifying : python-backports-1.0-8.el7.x86_64 26/47 Verifying : xorg-x11-proto-devel-7.7-20.el7.noarch 27/47 Verifying : libXext-devel-1.3.3-3.el7.x86_64 28/47 Verifying : libxcb-devel-1.12-1.el7.x86_64 29/47 Verifying : mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 30/47 Verifying : freeglut-devel-2.8.1-3.el7.x86_64 31/47 Verifying : python-devel-2.7.5-69.el7_5.x86_64 32/47 Verifying : freeglut-2.8.1-3.el7.x86_64 33/47 Verifying : libX11-devel-1.6.5-1.el7.x86_64 34/47 Verifying : libX11-common-1.6.5-1.el7.noarch 35/47 Verifying : 1:emacs-filesystem-24.3-20.el7_4.noarch 36/47 Verifying : freetype-devel-2.4.11-15.el7.x86_64 37/47 Verifying : libxshmfence-1.2-1.el7.x86_64 38/47 Verifying : libXfixes-devel-5.0.3-1.el7.x86_64 39/47 Verifying : libGLEW-1.10.0-5.el7.x86_64 40/47 Verifying : libXau-1.0.8-2.1.el7.x86_64 41/47 Verifying : hwdata-0.252-8.8.el7.x86_64 42/47 Verifying : python-2.7.5-69.el7_5.x86_64 43/47 Verifying : libXdamage-1.1.4-4.1.el7.x86_64 44/47 Verifying : libXfixes-5.0.3-1.el7.x86_64 45/47 Verifying : libXau-devel-1.0.8-2.1.el7.x86_64 46/47 Verifying : libdrm-2.4.83-2.el7.x86_64 47/47 Installed: desktop-file-utils.x86_64 0:0.23-1.el7 freeglut-devel.x86_64 0:2.8.1-3.el7 freetype-devel.x86_64 0:2.4.11-15.el7 glew-devel.x86_64 0:1.10.0-5.el7 libpng-devel.x86_64 2:1.5.13-7.el7_2 mesa-libGL-devel.x86_64 0:17.2.3-8.20171019.el7 python-devel.x86_64 0:2.7.5-69.el7_5 python-setuptools.noarch 0:0.9.8-7.el7 python2-simplejson.x86_64 0:3.10.0-1.el7 Dependency Installed: emacs-filesystem.noarch 1:24.3-20.el7_4 freeglut.x86_64 0:2.8.1-3.el7 freetype.x86_64 0:2.4.11-15.el7 gl-manpages.noarch 0:1.1-7.20130122.el7 hwdata.x86_64 0:0.252-8.8.el7 libGLEW.x86_64 0:1.10.0-5.el7 libGLEWmx.x86_64 0:1.10.0-5.el7 libX11.x86_64 0:1.6.5-1.el7 libX11-common.noarch 0:1.6.5-1.el7 libX11-devel.x86_64 0:1.6.5-1.el7 libXau.x86_64 0:1.0.8-2.1.el7 libXau-devel.x86_64 0:1.0.8-2.1.el7 libXdamage.x86_64 0:1.1.4-4.1.el7 libXdamage-devel.x86_64 0:1.1.4-4.1.el7 libXext.x86_64 0:1.3.3-3.el7 libXext-devel.x86_64 0:1.3.3-3.el7 libXfixes.x86_64 0:5.0.3-1.el7 libXfixes-devel.x86_64 0:5.0.3-1.el7 libXi.x86_64 0:1.7.9-1.el7 libXxf86vm.x86_64 0:1.1.4-1.el7 libXxf86vm-devel.x86_64 0:1.1.4-1.el7 libdrm.x86_64 0:2.4.83-2.el7 libdrm-devel.x86_64 0:2.4.83-2.el7 libpciaccess.x86_64 0:0.14-1.el7 libpng.x86_64 2:1.5.13-7.el7_2 libxcb.x86_64 0:1.12-1.el7 libxcb-devel.x86_64 0:1.12-1.el7 libxshmfence.x86_64 0:1.2-1.el7 mesa-libGL.x86_64 0:17.2.3-8.20171019.el7 mesa-libGLU.x86_64 0:9.0.0-4.el7 mesa-libGLU-devel.x86_64 0:9.0.0-4.el7 mesa-libglapi.x86_64 0:17.2.3-8.20171019.el7 python.x86_64 0:2.7.5-69.el7_5 python-backports.x86_64 0:1.0-8.el7 python-backports-ssl_match_hostname.noarch 0:3.5.0.1-1.el7 python-ipaddress.noarch 0:1.0.16-2.el7 xorg-x11-proto-devel.noarch 0:7.7-20.el7 zlib-devel.x86_64 0:1.2.7-17.el7 Complete! Finish: build setup for pymol-1.7.1-1.20140519svn4076.el7.src.rpm Start: rpmbuild pymol-1.7.1-1.20140519svn4076.el7.src.rpm warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0NXsNC + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pymol-1.7.1 + /usr/bin/xz -dc /builddir/build/SOURCES/pymol-1.7.1-20140519svn4076.tar.xz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd pymol-1.7.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (pymol-setup.py.patch): + echo 'Patch #0 (pymol-setup.py.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/pymol-setup.py.patch patching file setup.py Patch #1 (pymol-init.py.patch): + echo 'Patch #1 (pymol-init.py.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/pymol-init.py.patch patching file modules/pymol/__init__.py Hunk #1 succeeded at 143 (offset 1 line). Patch #2 (pymol-maeffplugin.cpp.patch): + echo 'Patch #2 (pymol-maeffplugin.cpp.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/pymol-maeffplugin.cpp.patch patching file contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp + mv modules/web modules/pymol_web + sed -i 1d modules/pmg_tk/startup/apbs_tools.py + chmod 644 data/xray/atomformfactor2.dat data/xray/atomformfactor5.dat data/xray/spgbase.dat + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6IXJDU + umask 022 + cd /builddir/build/BUILD + cd pymol-1.7.1 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + /usr/bin/python -c 'import setuptools; execfile("setup.py")' build numpy not available running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/pymol_web creating build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pymol_web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pymol_web/examples/__init__.py -> build/lib.linux-x86_64-2.7/pymol_web/examples copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/make_cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol_web/__init__.py -> build/lib.linux-x86_64-2.7/pymol_web copying modules/pymol_web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/pymol_web creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Matrix.c -o build/temp.linux-x86_64-2.7/layer0/Matrix.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o layer0/Matrix.c: In function 'MatrixFitRMSTTTf': layer0/Matrix.c:1180:18: warning: variable 'ix' set but not used [-Wunused-but-set-variable] int iters, ix, iy, iz, unchanged = 0; ^ ov/src/OVLexicon.c: In function 'OVLexicon_BorrowFromCString': ov/src/OVLexicon.c:360:11: warning: variable 'cur_index' set but not used [-Wunused-but-set-variable] ov_word cur_index = 0; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/ov_utility.c -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeap.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVRandom.c -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVContext.c -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o ov/src/OVContext.c: In function 'OVContext_Del': ov/src/OVContext.c:21:13: warning: variable 'heap' set but not used [-Wunused-but-set-variable] OVHeap *heap = I->heap; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Word.c -o build/temp.linux-x86_64-2.7/layer0/Word.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Deferred.c -o build/temp.linux-x86_64-2.7/layer0/Deferred.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Feedback.c -o build/temp.linux-x86_64-2.7/layer0/Feedback.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Raw.c -o build/temp.linux-x86_64-2.7/layer0/Raw.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Parse.c -o build/temp.linux-x86_64-2.7/layer0/Parse.o layer0/Parse.c: In function 'ParseFloat3List': layer0/Parse.c:173:7: warning: array subscript has type 'char' [-Wchar-subscripts] buf[blen] = 0; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Block.c -o build/temp.linux-x86_64-2.7/layer0/Block.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Map.c -o build/temp.linux-x86_64-2.7/layer0/Map.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryCache.c -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Texture.c -o build/temp.linux-x86_64-2.7/layer0/Texture.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/os_gl.c -o build/temp.linux-x86_64-2.7/layer0/os_gl.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Triangle.c -o build/temp.linux-x86_64-2.7/layer0/Triangle.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Field.c -o build/temp.linux-x86_64-2.7/layer0/Field.o layer0/Triangle.c: In function 'TriangleBuildLast': layer0/Triangle.c:1511:7: warning: variable 'both_active' set but not used [-Wunused-but-set-variable] int both_active; ^ layer0/Field.c: In function 'FieldNewFromPyList': layer0/Field.c:126:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer0/Field.c:125:16: warning: variable 'n_elem' set but not used [-Wunused-but-set-variable] unsigned int n_elem; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Queue.c -o build/temp.linux-x86_64-2.7/layer0/Queue.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Sphere.c -o build/temp.linux-x86_64-2.7/layer0/Sphere.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MyPNG.c -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer0/MyPNG.c:56: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/MyPNG.c:16: /usr/include/features.h:168:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer0/MyPNG.c:56: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/MyPNG.c:16: /usr/include/features.h:170:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tracker.c -o build/temp.linux-x86_64-2.7/layer0/Tracker.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Pixmap.c -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Util.c -o build/temp.linux-x86_64-2.7/layer0/Util.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Crystal.c -o build/temp.linux-x86_64-2.7/layer0/Crystal.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Debug.c -o build/temp.linux-x86_64-2.7/layer0/Debug.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Basis.c -o build/temp.linux-x86_64-2.7/layer1/Basis.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/CGO.c -o build/temp.linux-x86_64-2.7/layer1/CGO.o layer1/CGO.c: In function 'CGONewFromPyList': layer1/CGO.c:329:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer1/CGO.c: In function 'CGOFromFloatArray': layer1/CGO.c:530:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] int c; ^ layer1/CGO.c: In function 'CGOCombineBeginEnd': layer1/CGO.c:1935:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] uchar *pickColorValsUC; ^ layer1/CGO.c:1881:6: warning: unused variable 'ncolors' [-Wunused-variable] int ncolors = 0; ^ layer1/CGO.c: In function 'CGOCountNumVerticesForScreen': layer1/CGO.c:2313:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(op = (CGO_MASK & CGO_read_int(pc))) { ^ layer1/CGO.c: In function 'OptimizePointsToVBO': layer1/CGO.c:2642:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:2645:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:2649:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:2657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:2671:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/ShaderMgr.c -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o layer1/CGO.c:2682:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:2688:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:2699:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:2450:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOProcessCGOtoArrays': layer1/CGO.c:2730:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOProcessScreenCGOtoArrays': layer1/CGO.c:3012:8: warning: variable 'has_texcoord' set but not used [-Wunused-but-set-variable] short has_texcoord = false; ^ layer1/CGO.c:2966:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOOptimizeToVBONotIndexedWithReturnedData': layer1/CGO.c:3220:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3224:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3232:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3236:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3248:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3252:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3264:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3268:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3275:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3505:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3509:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3517:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3521:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3533:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3537:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3549:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3141:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOOptimizeToVBOIndexedWithColorImpl': layer1/CGO.c:3890:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3893:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3905:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3909:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3921:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3925:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3937:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3941:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3949:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3953:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3960:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4200:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4203:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4207:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4215:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4219:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4231:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4235:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4247:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4251:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4259:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3631:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOOptimizeGLSLCylindersToVBOIndexedImpl': layer1/CGO.c:4621:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4624:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4628:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4661:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4667:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4671:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c: In function 'CGOOptimizeSpheresToVBONonIndexedImpl': layer1/CGO.c:4932:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4935:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4939:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4963:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c: In function 'CGOSimplify': layer1/CGO.c:5171:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] uchar *pickColorValsUC; ^ In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer0/ShaderMgr.c:18: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer0/ShaderMgr.c:17: /usr/include/features.h:168:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer0/ShaderMgr.c:18: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer0/ShaderMgr.c:17: /usr/include/features.h:170:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 ^ layer1/CGO.c: In function 'CGOOptimizeTextures': layer1/CGO.c:5385:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5389:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5392:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5400:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5405:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5412:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5416:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5423:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n") ^ layer1/CGO.c: In function 'CGOOptimizeLabels': layer1/CGO.c:5582:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5586:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5589:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5597:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5602:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5609:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5613:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5620:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n") ^ layer1/CGO.c:5624:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5631:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n") ^ layer1/CGO.c: In function 'CGOExpandDrawTextures': layer1/CGO.c:5679:30: warning: variable 'onvals' set but not used [-Wunused-but-set-variable] int nvals = narrays*nverts, onvals; ^ layer1/CGO.c: In function 'CGORenderRay': layer1/CGO.c:6220:42: warning: variable 'pickColorVals' set but not used [-Wunused-but-set-variable] float *normalVals = 0, *colorVals = 0, *pickColorVals; ^ layer1/CGO.c: In function 'CGO_gl_draw_buffers_indexed': layer1/CGO.c:6662:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("beginning of CGO_gl_draw_buffers_indexed returns err=%d\n"); ^ layer1/CGO.c:6788:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: before glDrawElements returns err=%d\n"); ^ layer1/CGO.c:6790:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: after glDrawElements returns err=%d\n"); ^ layer1/CGO.c:6835:1: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: end returns err=%d\n"); ^ layer1/CGO.c: In function 'CGO_gl_draw_label': layer1/CGO.c:7136:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer0/ShaderMgr.c: In function 'CShaderPrg_ReplaceStringsInPlace': layer0/ShaderMgr.c:161:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(rstr=strstr(dest_line, replaceStrings[i])){ ^ layer1/CGO.c:7136:36: warning: variable 'screenMax' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c:7136:22: warning: variable 'screenMin' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c: In function 'CGO_gl_draw_texture': layer0/ShaderMgr.c: In function 'CShaderMgr_Reload_Shader_Variables': layer0/ShaderMgr.c:401:7: warning: variable 'bg_image_mode_solid' set but not used [-Wunused-but-set-variable] int bg_image_mode_solid; ^ layer1/CGO.c:7177:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer0/ShaderMgr.c: In function 'CShaderPrg_BindAttribLocations': layer0/ShaderMgr.c:509:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:513:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:517:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_BindLabelAttribLocations': layer0/ShaderMgr.c:528:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:535:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_BindCylinderAttribLocations': layer0/ShaderMgr.c:549:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:553:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:557:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:561:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_Reload': layer0/ShaderMgr.c:700:24: warning: unused variable 'needAttach' [-Wunused-variable] int status, howLong, needAttach = 0; ^ layer0/ShaderMgr.c: In function 'ShaderMgrConfig': layer0/ShaderMgr.c:836:14: warning: unused variable 'err' [-Wunused-variable] GLenum err ; ^ layer0/ShaderMgr.c:885:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer1/CGO.c:7177:36: warning: variable 'screenMax' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c:7177:22: warning: variable 'screenMin' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer0/ShaderMgr.c: In function 'CShaderPrg_Enable_CylinderShader': layer0/ShaderMgr.c:1882:10: warning: variable 'm' set but not used [-Wunused-but-set-variable] float *m; ^ layer1/CGO.c: In function 'CGORenderGLPicking': layer1/CGO.c:7697:73: warning: variable 'pbnd' set but not used [-Wunused-but-set-variable] int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; ^ layer1/CGO.c:7697:57: warning: variable 'pidx' set but not used [-Wunused-but-set-variable] int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; ^ layer1/CGO.c: In function 'CGOSimpleCone': layer1/CGO.c:8765:15: warning: variable 'nub2' set but not used [-Wunused-but-set-variable] float nub1, nub2; ^ layer1/CGO.c:8765:9: warning: variable 'nub1' set but not used [-Wunused-but-set-variable] float nub1, nub2; ^ In file included from layer1/CGO.c:24:0: layer1/CGO.c: In function 'CGOGetSizeWithoutStops': layer1/CGO.h:35:26: warning: value computed is not used [-Wunused-value] #define CGO_read_int(p) (*((int*)((p)++))) ^ layer1/CGO.c:9045:5: note: in expansion of macro 'CGO_read_int' CGO_read_int(pc); ^ layer1/CGO.c: In function 'CGOChangeShadersTo': layer1/CGO.c:9567:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(op = (CGO_MASK & CGO_read_int(pc))) { ^ layer1/CGO.c: In function 'CGOOptimizeScreenTexturesAndPolygons': layer1/CGO.c:9685:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:9689:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:9697:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); ^ layer1/CGO.c:9701:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:9709:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); ^ layer1/CGO.c:9713:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:9724:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); ^ layer1/CGO.c: In function 'CGO_gl_draw_label': layer1/CGO.c:7160:15: warning: 'buf1' may be used uninitialized in this function [-Wmaybe-uninitialized] glBindBuffer(GL_ARRAY_BUFFER, buf1); ^ layer1/CGO.c:7162:15: warning: 'buf2' may be used uninitialized in this function [-Wmaybe-uninitialized] glBindBuffer(GL_ARRAY_BUFFER, buf2); ^ layer1/CGO.c: In function 'CGO_gl_draw_texture': layer1/CGO.c:7201:15: warning: 'buf1' may be used uninitialized in this function [-Wmaybe-uninitialized] glBindBuffer(GL_ARRAY_BUFFER, buf1); ^ layer1/CGO.c:7203:15: warning: 'buf2' may be used uninitialized in this function [-Wmaybe-uninitialized] glBindBuffer(GL_ARRAY_BUFFER, buf2); ^ layer1/CGO.c: In function 'CGO_gl_draw_buffers': layer1/CGO.c:6649:23: warning: 'shaderPrg' may be used uninitialized in this function [-Wmaybe-uninitialized] CShaderPrg_Disable(shaderPrg); ^ layer1/CGO.c: In function 'CGO_gl_draw_arrays': layer1/CGO.c:6558:13: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] glVertex3fv(&vertexVals[pla]); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Err.c -o build/temp.linux-x86_64-2.7/layer0/Err.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Isosurf.c -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o layer0/Isosurf.c: In function 'IsosurfNewFromPyList': layer0/Isosurf.c:168:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer0/Isosurf.c: In function 'IsofieldGetCorners': layer0/Isosurf.c:2211:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ layer1/CGO.c: In function 'CGOCombineBeginEnd': layer1/CGO.c:1998:13: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; ^ layer1/CGO.c: In function 'OptimizePointsToVBO': layer1/CGO.c:2607:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c: In function 'CGOProcessCGOtoArrays': layer1/CGO.c:2887:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c:2887:29: warning: 'accessibilityValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] layer1/CGO.c:2887:29: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] layer1/CGO.c: In function 'CGOOptimizeToVBONotIndexedWithReturnedData': layer1/CGO.c:3429:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c:3429:29: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Match.c -o build/temp.linux-x86_64-2.7/layer0/Match.o layer1/CGO.c: In function 'CGOSimplify': layer1/CGO.c:5213:13: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tetsurf.c -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o layer1/CGO.c: In function 'CGORenderRay': layer1/CGO.c:6244:9: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] v0 = &vertexVals[pl]; ^ layer1/CGO.c: In function 'CGORenderGLPicking': layer1/CGO.c:7775:20: warning: 'pca' may be used uninitialized in this function [-Wmaybe-uninitialized] pickColorVals = pca + nverts; ^ layer1/CGO.c:7775:26: warning: 'nverts' may be used uninitialized in this function [-Wmaybe-uninitialized] pickColorVals = pca + nverts; ^ layer1/CGO.c: In function 'CGORenderGL': layer1/CGO.c:8085:12: warning: 'normalVals_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] n2 = normalVals_tmp + 3; ^ layer1/CGO.c: In function 'CGOOptimizeGLSLCylindersToVBOIndexedImpl': layer1/CGO.c:4642:15: warning: 'org_colorVals' may be used uninitialized in this function [-Wmaybe-uninitialized] glBufferData(GL_ARRAY_BUFFER, sizeof(float)*total_vert*4, org_colorVals, GL_STATIC_DRAW); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Setting.c -o build/temp.linux-x86_64-2.7/layer1/Setting.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Vector.c -o build/temp.linux-x86_64-2.7/layer0/Vector.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/P.c -o build/temp.linux-x86_64-2.7/layer1/P.o layer1/P.c: In function 'PLabelExprUsesVariable': layer1/P.c:191:17: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] OrthoLineType buffer; ^ layer1/P.c: In function 'PLabelAtomAlt': layer1/P.c:343:8: warning: the address of 'tok' will always evaluate as 'true' [-Waddress] if (tok && tok[0]){ ^ layer1/P.c: In function 'PAlterAtomState': layer1/P.c:824:59: warning: variable 'z_id1' set but not used [-Wunused-but-set-variable] PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; ^ layer1/P.c:824:36: warning: variable 'y_id1' set but not used [-Wunused-but-set-variable] PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; ^ layer1/P.c:824:13: warning: variable 'x_id1' set but not used [-Wunused-but-set-variable] PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; ^ layer1/P.c: In function 'PUnlockAPIAsGlut': layer1/P.c:1468:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c: In function 'PUnlockAPIAsGlutNoFlush': layer1/P.c:1482:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c: In function 'PLockAPIAsGlut': layer1/P.c:1533:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c:1545:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c:1563:7: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c: In function 'PFlush': layer1/P.c:2635:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(size = OrthoCommandOutSize(G)){ ^ layer1/P.c: In function 'PFlushFast': layer1/P.c:2679:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(size = OrthoCommandOutSize(G)){ ^ layer1/P.c:2693:7: warning: format '%x' expects argument of type 'unsigned int', but argument 4 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c: In function 'PAutoBlock': layer1/P.c:2789:9: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] SavedThread[MAX_SAVED_THREAD - 2].id, SavedThread[MAX_SAVED_THREAD - 3].id ENDFD; ^ layer1/P.c:2798:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer1/P.c: In function 'PUnblock': layer1/P.c:2818:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Color.c -o build/temp.linux-x86_64-2.7/layer1/Color.o layer1/Color.c: In function 'ColorExtFromPyList': layer1/Color.c:406:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer1/Color.c: In function 'ColorDef': layer1/Color.c:576:7: warning: variable 'best' set but not used [-Wunused-but-set-variable] int best; ^ layer1/Color.c: In function 'Color3fToInt': layer1/Color.c:3069:16: warning: unused variable 'result' [-Wunused-variable] unsigned int result; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Wizard.c -o build/temp.linux-x86_64-2.7/layer1/Wizard.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Movie.c -o build/temp.linux-x86_64-2.7/layer1/Movie.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Extrude.c -o build/temp.linux-x86_64-2.7/layer1/Extrude.o layer1/Extrude.c: In function 'ExtrudeCGOSurfaceVariableTube': layer1/Extrude.c:1124:14: warning: variable 'stop' set but not used [-Wunused-but-set-variable] int start, stop; ^ layer1/Extrude.c:1124:7: warning: variable 'start' set but not used [-Wunused-but-set-variable] int start, stop; ^ In file included from layer0/OOMac.h:21:0, from layer1/Extrude.c:25: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceTube': layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer1/Extrude.c:690:47: note: 'TN' was declared here float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Seq.c -o build/temp.linux-x86_64-2.7/layer1/Seq.o In file included from layer0/OOMac.h:21:0, from layer1/Extrude.c:25: layer1/Extrude.c: In function 'ExtrudeCGOSurfacePolygon': layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer1/Extrude.c:1390:47: note: 'TN' was declared here float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; ^ layer1/Seq.c: In function 'SeqDrag': layer1/Seq.c:182:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] CSeqCol *col; ^ layer1/Seq.c: In function 'SeqRelease': layer1/Seq.c:213:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] CSeqCol *col; ^ layer1/Seq.c: In function 'SeqClick': layer1/Seq.c:267:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] CSeqCol *col; ^ In file included from layer0/OOMac.h:21:0, from layer1/Extrude.c:25: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceStrand': layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer1/Extrude.c:1708:47: note: 'TN' was declared here float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ortho.c -o build/temp.linux-x86_64-2.7/layer1/Ortho.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ButMode.c -o build/temp.linux-x86_64-2.7/layer1/ButMode.o layer1/Ortho.c: In function 'OrthoDoDraw': layer1/Ortho.c:1520:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] float *v; ^ layer1/Ortho.c: In function 'bg_grad': layer1/Ortho.c:1430:14: warning: 'cgo2' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOFree(cgo2); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/TypeFace.c -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontType.c -o build/temp.linux-x86_64-2.7/layer1/FontType.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ray.c -o build/temp.linux-x86_64-2.7/layer1/Ray.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/View.c -o build/temp.linux-x86_64-2.7/layer1/View.o In file included from layer1/Ray.c:44:0: layer1/Basis.c: In function 'ConeLineToSphereCapped': layer1/Basis.c:846:11: warning: variable 'base2orig_len' set but not used [-Wunused-but-set-variable] float base2orig_len, base2orig_len_sq; ^ layer1/Basis.c: In function 'BasisHitShadow': layer1/Basis.c:2361:7: warning: variable 'check_interior_flag' set but not used [-Wunused-but-set-variable] int check_interior_flag; ^ layer1/Basis.c:2360:7: warning: variable 'excl_trans_flag' set but not used [-Wunused-but-set-variable] int excl_trans_flag; ^ layer1/Ray.c: In function 'RayRenderG3d': layer1/Ray.c:967:36: warning: variable 'scale_z' set but not used [-Wunused-but-set-variable] register float scale_x, scale_y, scale_z; ^ layer1/Ray.c: In function 'RayRenderIDTF': layer1/Ray.c:2132:11: warning: variable 'mesh_start' set but not used [-Wunused-but-set-variable] int mesh_start = 0; ^ layer1/Ray.c: In function 'RayRenderPOV': layer1/Ray.c:2445:28: warning: variable 'bkrd_bottom' set but not used [-Wunused-but-set-variable] float *bkrd, *bkrd_top, *bkrd_bottom; ^ layer1/Ray.c:2445:17: warning: variable 'bkrd_top' set but not used [-Wunused-but-set-variable] float *bkrd, *bkrd_top, *bkrd_bottom; ^ layer1/Ray.c:2443:7: warning: variable 'fogRangeFlag' set but not used [-Wunused-but-set-variable] int fogRangeFlag = false; ^ layer1/Ray.c:2442:7: warning: variable 'fogFlag' set but not used [-Wunused-but-set-variable] int fogFlag = false; ^ layer1/Ray.c: In function 'RayRender': layer1/Ray.c:6119:15: warning: variable 'dc' set but not used [-Wunused-but-set-variable] int dc = 0; ^ layer1/View.c: In function 'matrix_interpolate': layer1/View.c:657:23: warning: variable 'center' set but not used [-Wunused-but-set-variable] float p0[3], p1[3], center[3]; ^ layer1/View.c:657:16: warning: variable 'p1' set but not used [-Wunused-but-set-variable] float p0[3], p1[3], center[3]; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Shaker.c -o build/temp.linux-x86_64-2.7/layer1/Shaker.o layer1/Shaker.c: In function 'ShakerGetPyra': layer1/Shaker.c:73:16: warning: variable 't0' set but not used [-Wunused-but-set-variable] float av[3], t0[3]; ^ layer1/Shaker.c: In function 'ShakerDoPyra': layer1/Shaker.c:94:16: warning: variable 't0' set but not used [-Wunused-but-set-variable] float av[3], t0[3], push[3]; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PConv.c -o build/temp.linux-x86_64-2.7/layer1/PConv.o In file included from layer1/Ray.c:24:0: layer1/Basis.c: In function 'BasisMakeMap': layer0/Err.h:29:43: warning: 'tempRef' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ In file included from layer1/Ray.c:44:0: layer1/Basis.c:2871:17: note: 'tempRef' was declared here register int *tempRef; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Rep.c -o build/temp.linux-x86_64-2.7/layer1/Rep.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o layer1/PyMOLObject.c: In function 'ObjectMotion': layer1/PyMOLObject.c:383:13: warning: variable 'zero_flag' set but not used [-Wunused-but-set-variable] int zero_flag = -1; ^ layer1/PyMOLObject.c: In function 'ObjectStateFromPyList': layer1/PyMOLObject.c:1468:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll = 0; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Symmetry.c -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Character.c -o build/temp.linux-x86_64-2.7/layer1/Character.o In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer1/CGO.h:22, from layer1/Character.c:29: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer1/Character.c:18: /usr/include/features.h:168:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer1/CGO.h:22, from layer1/Character.c:29: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer1/Character.c:18: /usr/include/features.h:170:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 ^ layer1/Character.c: In function 'CharacterRenderOpenGL': layer1/Character.c:273:18: warning: unused variable 'texVals' [-Wunused-variable] const GLfloat texVals [] = { ^ layer1/Character.c:267:18: warning: unused variable 'vertexVals' [-Wunused-variable] const GLfloat vertexVals [] = { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Scene.c -o build/temp.linux-x86_64-2.7/layer1/Scene.o layer1/Ray.c: In function 'RayTraceThread': layer1/Ray.c:3483:25: warning: 'back_mask' may be used uninitialized in this function [-Wmaybe-uninitialized] bkrd_value = back_mask | ^ layer1/Scene.c: In function 'SceneDrawImageOverlay': layer1/Scene.c:3346:20: warning: variable 'color_word' set but not used [-Wunused-but-set-variable] unsigned int color_word; ^ layer1/Scene.c: In function 'SceneReadTriplets': layer1/Scene.c:3569:7: warning: variable 'dim' set but not used [-Wunused-but-set-variable] int dim[3]; ^ layer1/Scene.c: In function 'SceneDrag': layer1/Scene.c:5955:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result, which_light; ^ layer1/Scene.c:6003:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result, which_light; ^ layer1/Scene.c: In function 'SceneReshape': layer1/Scene.c:6379:7: warning: variable 'y' set but not used [-Wunused-but-set-variable] int y = height; ^ layer1/Scene.c: In function 'SceneApplyImageGamma': layer1/Scene.c:6536:7: warning: variable 'big_endian' set but not used [-Wunused-but-set-variable] int big_endian; ^ layer1/Scene.c: In function 'SceneRay': layer1/Scene.c:6764:7: warning: variable 'curState' set but not used [-Wunused-but-set-variable] int curState; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Pop.c -o build/temp.linux-x86_64-2.7/layer1/Pop.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectVolume.c -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o layer2/ObjectVolume.c: In function 'ObjectVolumeNewFromPyList': layer2/ObjectVolume.c:270:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectVolume.c: In function 'ObjectVolumeUpdate': layer2/ObjectVolume.c:443:50: warning: statement with no effect [-Wunused-value] a, vs->RefreshFlag, vs->ResurfaceFlag ENDFD(G); ^ layer2/ObjectVolume.c:466:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) { ^ layer2/ObjectVolume.c:507:26: warning: variable 'max_ext' set but not used [-Wunused-but-set-variable] float *min_ext, *max_ext; ^ layer2/ObjectVolume.c:507:16: warning: variable 'min_ext' set but not used [-Wunused-but-set-variable] float *min_ext, *max_ext; ^ layer2/ObjectVolume.c: In function 'ObjectVolumeRender': layer2/ObjectVolume.c:899:89: warning: suggest parentheses around '&&' within '||' [-Wparentheses] CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCGO.c -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCylBond.c -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o layer2/RepCylBond.c: In function 'RepCylBondPopulateAdjacentAtoms': layer2/RepCylBond.c:1381:25: warning: variable 'h_scale' set but not used [-Wunused-but-set-variable] float radius, transp, h_scale; ^ layer2/RepCylBond.c:1381:17: warning: variable 'transp' set but not used [-Wunused-but-set-variable] float radius, transp, h_scale; ^ layer2/RepCylBond.c:1381:9: warning: variable 'radius' set but not used [-Wunused-but-set-variable] float radius, transp, h_scale; ^ layer2/RepCylBond.c:1378:10: warning: variable 'ord' set but not used [-Wunused-but-set-variable] int a, ord, a1, a2, stick_color, c1, c2, s1, s2, half_bonds, hide_long = false; ^ layer2/RepCylBond.c: In function 'RepCylBondNew': layer2/RepCylBond.c:1541:16: warning: variable 'v_size' set but not used [-Wunused-but-set-variable] unsigned int v_size, vr_size; ^ layer2/RepCylBond.c:1534:7: warning: variable 'stick_round_nub' set but not used [-Wunused-but-set-variable] int stick_round_nub; ^ layer2/RepCylBond.c: At top level: layer2/RepCylBond.c:2361:13: warning: 'subdivide' defined but not used [-Wunused-function] static void subdivide(int n, float *x, float *y) ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Font.c -o build/temp.linux-x86_64-2.7/layer1/Font.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Control.c -o build/temp.linux-x86_64-2.7/layer1/Control.o layer1/Control.c: In function 'ControlDrag': layer1/Control.c:251:7: warning: variable 'width' set but not used [-Wunused-but-set-variable] int width; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ScrollBar.c -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer1/CGO.h:22, from layer1/ScrollBar.c:23: /usr/include/python2.7/pyconfig-64.h:1191:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer1/ScrollBar.c:17: /usr/include/features.h:168:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ In file included from /usr/include/python2.7/pyconfig.h:6:0, from /usr/include/python2.7/Python.h:8, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer1/CGO.h:22, from layer1/ScrollBar.c:23: /usr/include/python2.7/pyconfig-64.h:1213:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/malloc.h:23:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer1/ScrollBar.c:17: /usr/include/features.h:170:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Text.c -o build/temp.linux-x86_64-2.7/layer1/Text.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/AtomInfo.c -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/DistSet.c -o build/temp.linux-x86_64-2.7/layer2/DistSet.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSurface.c -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o layer2/ObjectSurface.c: In function 'ObjectSurfaceUpdate': layer2/ObjectSurface.c:498:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDihedral.c -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o layer2/RepDihedral.c: In function 'RepDihedralNew': layer2/RepDihedral.c:527:15: warning: variable 'mod_pos' set but not used [-Wunused-but-set-variable] float mod_pos; ^ layer2/RepDihedral.c:383:37: warning: variable 'v6' set but not used [-Wunused-but-set-variable] float *v1, *v2, *v3, *v4, *v5, *v6; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSlice.c -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o layer2/ObjectSlice.c: In function 'ObjectSliceStateFromPyList': layer2/ObjectSlice.c:103:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectSlice.c: In function 'ObjectSliceNewFromPyList': layer2/ObjectSlice.c:172:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectSlice.c: In function 'ObjectSliceUpdate': layer2/ObjectSlice.c:709:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectSlice.c: In function 'GenerateOutlineOfSlice': layer2/ObjectSlice.c:1120:14: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOSphere(cgo, origin, 1.f); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepLabel.c -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSphere.c -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o layer2/RepSphere.c: In function 'RenderSphereMode_Direct': layer2/RepSphere.c:900:13: warning: variable 'last_vdw' set but not used [-Wunused-but-set-variable] float last_vdw = -1.0F; ^ layer2/RepSphere.c: In function 'RepSphereComputeSphereNormals': layer2/RepSphere.c:2479:15: warning: variable 'nbr_flag' set but not used [-Wunused-but-set-variable] register int nbr_flag; ^ layer2/RepSphere.c: In function 'RepSphereNew': layer2/RepSphere.c:2832:17: warning: variable 'ai2' set but not used [-Wunused-but-set-variable] AtomInfoType *ai2; ^ layer2/RepSphere.c: In function 'RepSphereRender': layer2/RepSphere.c:2306:29: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] RenderSphereMode_Points(G, I, info, radius, c); ^ layer2/RepSphere.c:2312:24: warning: 'n_quad_verts' may be used uninitialized in this function [-Wmaybe-uninitialized] RenderSphereMode_9(G, I, info, n_quad_verts, &v, radius, c); ^ layer2/RepSphere.c: In function 'RepSphereGenerateGeometryCullForSphere': layer2/RepSphere.c:2670:13: warning: 'v1[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] v1[0] += v0[0] + vdw * sp->dot[q1][0]; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/SculptCache.c -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o layer2/ObjectGadgetRamp.c: In function 'ObjectGadgetRampUpdateCGO': layer2/ObjectGadgetRamp.c:651:10: warning: variable 'p' set but not used [-Wunused-but-set-variable] float *p; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepMesh.c -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o layer2/RepMesh.c: In function 'RepMeshRender': layer2/RepMesh.c:314:27: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] axis[1] = v[1] - origin[1]; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCartoon.c -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o layer2/RepCartoon.c: In function 'do_ring': layer2/RepCartoon.c:282:7: warning: variable 'cartoon_color' set but not used [-Wunused-but-set-variable] int cartoon_color; ^ layer2/RepCartoon.c: In function 'nuc_acid': layer2/RepCartoon.c:1497:22: warning: variable 'v_n' set but not used [-Wunused-but-set-variable] float *v_o, *v_c, *v_n, t0[3]; ^ layer2/RepCartoon.c: In function 'GenerateRepCartoonCGO': layer2/RepCartoon.c:1662:31: warning: variable 'ring_finder_eff' set but not used [-Wunused-but-set-variable] int ring_mode, ring_finder, ring_finder_eff; ^ layer2/RepCartoon.c: In function 'RepCartoonNew': layer2/RepCartoon.c:2889:9: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] float alpha; ^ layer2/RepCartoon.c:2876:7: warning: variable 'skip_to' set but not used [-Wunused-but-set-variable] int skip_to; ^ layer2/RepCartoon.c:2865:7: warning: variable 'highlight_color' set but not used [-Wunused-but-set-variable] int highlight_color; ^ layer2/RepCartoon.c:2861:7: warning: variable 'cartoon_debug' set but not used [-Wunused-but-set-variable] int cartoon_debug; ^ layer2/RepMesh.c: In function 'RepMeshNew': layer2/RepMesh.c:1176:23: warning: 'field' may be used uninitialized in this function [-Wmaybe-uninitialized] IsosurfFieldFree(G, field); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistDash.c -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o layer2/RepDistDash.c: In function 'RepDistDashNew': layer2/RepDistDash.c:351:29: warning: variable 'd1' set but not used [-Wunused-but-set-variable] float *v, *v1, *v2, d[3], d1[3]; ^ layer2/RepCartoon.c: In function 'do_ring': layer2/RepCartoon.c:1288:27: warning: 'ai' may be used uninitialized in this function [-Wmaybe-uninitialized] color = ColorGet(G, AtomInfoGetColorWithElement(G, ai, "C")); /* NEED TO CHANGE TO CARBON COLOR */ ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o layer2/ObjectMolecule2.c: In function 'ObjectMoleculePDBStr2CoordSet': layer2/ObjectMolecule2.c:1674:7: warning: variable 'have_conect' set but not used [-Wunused-but-set-variable] int have_conect = false; ^ layer2/ObjectMolecule2.c:1673:7: warning: variable 'seen_conect' set but not used [-Wunused-but-set-variable] int seen_conect = false; ^ layer2/ObjectMolecule2.c: In function 'ObjectMoleculeNewFromPyList': layer2/ObjectMolecule2.c:3685:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbonded.c -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepWireBond.c -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/CoordSet.c -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o layer2/CoordSet.c: In function 'CoordSetAtomToChemPyAtom': layer2/CoordSet.c:1021:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepRibbon.c -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o In file included from layer0/OOMac.h:21:0, from layer2/ObjectMolecule2.c:26: layer2/ObjectMolecule2.c: In function 'ObjectMoleculeSort': layer0/Err.h:29:43: warning: 'dAtmToIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer2/ObjectMolecule2.c:4311:8: note: 'dAtmToIdx' was declared here int *dAtmToIdx; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCallback.c -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.c -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.c -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o layer2/RepNonbondedSphere.c: In function 'RepNonbondedSphereRender': layer2/RepNonbondedSphere.c:197:25: warning: variable 'use_default_shader' set but not used [-Wunused-but-set-variable] short use_shader, use_default_shader, use_sphere_shader, generate_shader_cgo = 0, use_display_lists = 0; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/VFont.c -o build/temp.linux-x86_64-2.7/layer2/VFont.o layer2/VFont.c: In function 'VFontIndent': layer2/VFont.c:145:10: warning: variable 'pc' set but not used [-Wunused-but-set-variable] float *pc; ^ layer2/VFont.c:144:9: warning: variable 'base' set but not used [-Wunused-but-set-variable] float base[3], pen[3]; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectDist.c -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDot.c -o build/temp.linux-x86_64-2.7/layer2/RepDot.o layer2/ObjectDist.c: In function 'ObjectDistGetDistSetFromM4XBond': layer2/ObjectDist.c:187:25: warning: variable 'dist' set but not used [-Wunused-but-set-variable] float *vv0, *vv1, dist; ^ layer2/RepDot.c: In function 'RepDotRender': layer2/RepDot.c:195:33: warning: "/*" within comment [-Wcomment] /* if(normals) /* NORMALS do not get set for points ^ layer2/RepDot.c:220:24: warning: 'tmpCGO' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOFreeWithoutVBOs(tmpCGO); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSurface.c -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o layer2/ObjectMolecule.c: In function 'ObjectMoleculeFixSeleHydrogens': layer2/ObjectMolecule.c:686:13: warning: variable 'cs' set but not used [-Wunused-but-set-variable] CoordSet *cs; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadTRJFile': layer2/ObjectMolecule.c:841:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadPMOFile': layer2/ObjectMolecule.c:2810:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeRenderSele': layer2/ObjectMolecule.c:3245:51: warning: variable 'ai' set but not used [-Wunused-but-set-variable] register AtomInfoType *atInfo = I->AtomInfo, *ai; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadXYZFile': layer2/ObjectMolecule.c:3836:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeAttach': layer2/ObjectMolecule.c:4432:10: warning: variable 'nn' set but not used [-Wunused-but-set-variable] int n, nn; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeFindOpenValenceVector': layer2/ObjectMolecule.c:4655:22: warning: variable 'ai1' set but not used [-Wunused-but-set-variable] AtomInfoType *ai, *ai1; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeCreateSpheroid': layer2/RepSurface.c: In function 'RepSurfaceRender': layer2/RepSurface.c:1960:11: warning: variable 'col' set but not used [-Wunused-but-set-variable] float *col; ^ layer2/RepSurface.c:2221:28: warning: variable 'col' set but not used [-Wunused-but-set-variable] float *col; ^ layer2/ObjectMolecule.c:4836:10: warning: variable 'spl' set but not used [-Wunused-but-set-variable] float *spl; ^ layer2/RepSurface.c: In function 'RepSurfaceColor': layer2/RepSurface.c:3714:22: warning: variable 'planew' set but not used [-Wunused-but-set-variable] float d[3], *vn0, planew, v0mod[3]; ^ layer2/RepSurface.c:3793:29: warning: variable 'planew' set but not used [-Wunused-but-set-variable] float d[3], *vn0, pt[3], planew, v0mod[3]; ^ layer2/RepSurface.c:3793:22: warning: variable 'pt' set but not used [-Wunused-but-set-variable] float d[3], *vn0, pt[3], planew, v0mod[3]; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeGuessValences': layer2/RepSurface.c:3949:36: warning: variable 'pai2' set but not used [-Wunused-but-set-variable] AtomInfoType *pai = NULL, *pai2 = NULL; /* variables for color smoothing */ ^ layer2/ObjectMolecule.c:6305:29: warning: variable 'bnd2' set but not used [-Wunused-but-set-variable] int bnd2[5]; ^ layer2/ObjectMolecule.c:6079:38: warning: variable 'c2_len' set but not used [-Wunused-but-set-variable] float c1_len = 0.0F, c2_len = 0.0F; ^ layer2/ObjectMolecule.c:6079:23: warning: variable 'c1_len' set but not used [-Wunused-but-set-variable] float c1_len = 0.0F, c2_len = 0.0F; ^ layer2/ObjectMolecule.c:6078:56: warning: variable 'c2_bd' set but not used [-Wunused-but-set-variable] int c1_at = -1, c2_at = -1, c1_bd = 0, c2_bd = 0; ^ layer2/ObjectMolecule.c:6078:45: warning: variable 'c1_bd' set but not used [-Wunused-but-set-variable] int c1_at = -1, c2_at = -1, c1_bd = 0, c2_bd = 0; ^ layer2/ObjectMolecule.c:6073:68: warning: variable 'o4_len' set but not used [-Wunused-but-set-variable] float o1_len = 0.0F, o2_len = 0.0F, o3_len = 0.0F, o4_len = 0.0F; ^ layer2/ObjectMolecule.c:6073:53: warning: variable 'o3_len' set but not used [-Wunused-but-set-variable] float o1_len = 0.0F, o2_len = 0.0F, o3_len = 0.0F, o4_len = 0.0F; ^ layer2/RepSurface.c: In function 'SolventDotNew': layer2/RepSurface.c:5687:7: warning: variable 'maxDot' set but not used [-Wunused-but-set-variable] int maxDot = 0; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeMOL2SetFormalCharges': layer2/ObjectMolecule.c:8924:46: warning: variable 'n' set but not used [-Wunused-but-set-variable] int at, fcharge = 0, isProtein = 0, k, n; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeMOL2Str2CoordSet': layer2/ObjectMolecule.c:9323:38: warning: variable 'resv_flag' set but not used [-Wunused-but-set-variable] int chain_flag, resn_flag, resv_flag; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeInvalidateAtomType': layer2/ObjectMolecule.c:12149:16: warning: variable 'a' set but not used [-Wunused-but-set-variable] int ai, atm, a; ^ layer2/RepSurface.c: In function 'SurfaceJobRun': layer2/RepSurface.c:4648:18: warning: 'solv_map' may be used uninitialized in this function [-Wmaybe-uninitialized] MapFree(solv_map); ^ In file included from layer2/ObjectMolecule.c:26:0: layer2/ObjectMolecule.c: In function 'compute_avg_ring_dot_cross_fn.constprop.5': layer0/Vector.h:283:36: warning: 'cp[0][0]' may be used uninitialized in this function [-Wmaybe-uninitialized] #define copy3f(v1,v2) {(v2)[0]=(v1)[0]; (v2)[1]=(v1)[1]; (v2)[2]=(v1)[2];} ^ layer2/ObjectMolecule.c:5813:27: note: 'cp' was declared here float d10[3], d21[3], cp[8][3]; ^ layer2/RepSurface.c: In function 'RepSurfaceRender': layer2/RepSurface.c:3324:13: warning: 'simple' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOFree(simple); ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadRSTFile': layer2/ObjectMolecule.c:1357:10: warning: 'buffer' may be used uninitialized in this function [-Wmaybe-uninitialized] mfree(buffer); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMap.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o layer2/ObjectMap.c: In function 'ObjectMapStateTrim': layer2/ObjectMap.c:477:7: warning: variable 'max' set but not used [-Wunused-but-set-variable] int max[3]; ^ layer2/ObjectMap.c: In function 'ObjectMapStateInterpolate': layer2/ObjectMap.c:1107:10: warning: variable 'out' set but not used [-Wunused-but-set-variable] float *out; ^ layer2/ObjectMap.c: In function 'ObjectMapNewFromPyList': layer2/ObjectMap.c:1586:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectMap.c: In function 'ObjectMapCCP4StrToMap': layer2/ObjectMap.c:2724:5: warning: implicit declaration of function 'UtilNCopy' [-Wimplicit-function-declaration] UtilNCopy(ms->Symmetry->SpaceGroup, space_group_numbers[ispg], WordLength); ^ layer2/ObjectMap.c:2467:14: warning: variable 'xref' set but not used [-Wunused-but-set-variable] int cc[3], xref[3]; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadCCP4': layer2/ObjectMap.c:4590:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadPHI': layer2/ObjectMap.c:4761:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadDXFile': layer2/ObjectMap.c:5116:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadACNTFile': layer2/ObjectMap.c:5364:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadFLDFile': layer2/ObjectMap.c:5417:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeMerge': layer2/ObjectMolecule.c:9948:16: warning: 'i2a' may be used uninitialized in this function [-Wmaybe-uninitialized] cs->IdxToAtm = i2a; ^ layer2/ObjectMolecule.c:9944:12: warning: 'nAt' may be used uninitialized in this function [-Wmaybe-uninitialized] I->NAtom = nAt; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeAddSeleHydrogens': layer2/ObjectMolecule.c:4046:16: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] if(cs->fFree) ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/Sculpt.c -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o layer2/ObjectMolecule.c: In function 'ObjectMoleculeFillOpenValences': layer2/ObjectMolecule.c:4574:12: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] if(cs->fFree) ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistLabel.c -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepAngle.c -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o layer2/RepDistLabel.c: In function 'RepDistLabelNew': layer2/RepDistLabel.c:403:24: warning: variable 'v6' set but not used [-Wunused-but-set-variable] float *v4, *v5, *v6; ^ layer2/RepDistLabel.c:403:19: warning: variable 'v5' set but not used [-Wunused-but-set-variable] float *v4, *v5, *v6; ^ layer2/RepAngle.c: In function 'RepAngleNew': layer2/RepAngle.c:453:15: warning: variable 'mod_pos' set but not used [-Wunused-but-set-variable] float mod_pos; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/PyMOL.c -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.c -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o layer5/PyMOL.c: In function 'PyMOL_CmdGetNames': layer5/PyMOL.c:4590:15: warning: variable 'arg' set but not used [-Wunused-but-set-variable] char *res, *arg; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/GadgetSet.c -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o layer2/GadgetSet.c: In function 'GadgetSetFromPyList': layer2/GadgetSet.c:93:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/GadgetSet.c: In function 'GadgetSetRender': layer2/GadgetSet.c:303:13: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/GadgetSet.c:290:9: warning: variable 'use_shader' set but not used [-Wunused-but-set-variable] short use_shader; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadget.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o layer2/ObjectGadget.c: In function 'ObjectGadgetInitFromPyList': layer2/ObjectGadget.c:305:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGroup.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMesh.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o layer2/ObjectMesh.c: In function 'ObjectMeshNewFromPyList': layer2/ObjectMesh.c:231:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectMesh.c: In function 'ObjectMeshUpdate': layer2/ObjectMesh.c:604:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMesh.c: In function 'ObjectMeshRenderImpl': layer2/ObjectMesh.c:1123:58: warning: value computed is not used [-Wunused-value] for(; ok && (c = *(n++)); v += 3, vc && (vc += 3)) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Seeker.c -o build/temp.linux-x86_64-2.7/layer3/Seeker.o layer3/Seeker.c: In function 'SeekerRefresh': layer3/Seeker.c:505:22: warning: variable 'not_selected' set but not used [-Wunused-but-set-variable] register int not_selected; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/TestPyMOL.c -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o layer5/TestPyMOL.c: In function 'get_st': layer5/TestPyMOL.c:76:25: warning: variable 'p' set but not used [-Wunused-but-set-variable] char *result = NULL, *p; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/main.c -o build/temp.linux-x86_64-2.7/layer5/main.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Selector.c -o build/temp.linux-x86_64-2.7/layer3/Selector.o layer3/Selector.c: In function 'SelectorGetSpacialMapFromSeleCoord': layer3/Selector.c:1491:23: warning: variable 'ai' set but not used [-Wunused-but-set-variable] AtomInfoType *ai; ^ layer3/Selector.c: In function 'SelectorAssignSS': layer3/Selector.c:2089:11: warning: variable 'c' set but not used [-Wunused-but-set-variable] int c, i, h, k, l; ^ layer3/Selector.c: In function 'SelectorGetPairIndices': layer3/Selector.c:3563:23: warning: variable 'ai2' set but not used [-Wunused-but-set-variable] AtomInfoType *ai1, *ai2; ^ layer3/Selector.c:3563:17: warning: variable 'ai1' set but not used [-Wunused-but-set-variable] AtomInfoType *ai1, *ai2; ^ layer3/Selector.c: In function 'SelectorMapMaskVDW': layer3/Selector.c:5356:11: warning: variable 'n2' set but not used [-Wunused-but-set-variable] int n1, n2; ^ layer3/Selector.c: In function 'SelectorSelect0': layer3/Selector.c:8621:15: warning: variable 's' set but not used [-Wunused-but-set-variable] int at, s; ^ layer3/Selector.c:8667:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 2 && b < 5 || ^ layer3/Selector.c:8669:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 18 && b < 32 || ^ layer3/Selector.c:8670:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 36 && b < 51 || ^ layer3/Selector.c:8671:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 54 && b < 85 || ^ layer3/Selector.c: In function 'SelectorSelect1': layer3/Selector.c:9089:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] int prevmodel; ^ layer3/Selector.c:9151:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] int prevmodel; ^ layer3/Selector.c: In function 'SelectorLogic1': layer3/Selector.c:10324:21: warning: variable 'ai' set but not used [-Wunused-but-set-variable] AtomInfoType *ai; ^ layer3/Selector.c: In function 'SelectorEvaluate': layer3/Selector.c:10856:19: warning: variable 'cc2' set but not used [-Wunused-but-set-variable] char *q, *cc1, *cc2; ^ layer3/Selector.c:10855:15: warning: variable 'opFlag2' set but not used [-Wunused-but-set-variable] int opFlag, opFlag2, maxLevel; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:41:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:37: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:41:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:48: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:40: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:47: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:39: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:652:19: warning: variable 'atomname' set but not used [-Wunused-but-set-variable] const char *atomname; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:0, from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:0: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function] static int fortread_4(void *dest, int n, int swap, FILE *fd) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:33:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c: In function 'write_crd_timestep': contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c:167:6: warning: 'lfdone' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!lfdone) ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:830:13: warning: 'eatline' defined but not used [-Wunused-function] static void eatline(FILE * fd, int n) ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:841:13: warning: 'eatwhitelines' defined but not used [-Wunused-function] static void eatwhitelines(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: 'iswhiteline' defined but not used [-Wunused-function] static int iswhiteline(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: 'strtoupper' defined but not used [-Wunused-function] static char *strtoupper(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:957:12: warning: 'goto_keyline' defined but not used [-Wunused-function] static int goto_keyline(FILE *file, ...) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: 'have_keyline' defined but not used [-Wunused-function] static int have_keyline(FILE *file, const char *keystring1, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:433:18: warning: 'init_qmdata' defined but not used [-Wunused-function] static qmdata_t* init_qmdata(qmdata_t *data) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:466:27: warning: 'add_wavefunction' defined but not used [-Wunused-function] static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] static void replace_wavefunction(qm_timestep_t *ts, int n) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] static void del_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:535:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function] static void angular_momentum_expon(int *ang_mom_expon, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] static int fpexpftoc(char *ftocstr) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:585:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'get_basis': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:37:0: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: 'have_keyline' defined but not used [-Wunused-function] static int have_keyline(FILE *file, const char *keystring1, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] static void replace_wavefunction(qm_timestep_t *ts, int n) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] static void del_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:48:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_parse_atom': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:234:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[16]' [-Wformat=] if (sscanf(s, "%16s %n", &atom.name, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:243:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[16]' [-Wformat=] if (sscanf(s, "%16s %n", &atom.type, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:269:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[8]' [-Wformat=] if (sscanf(s, "%8s %n", &atom.resname, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:284:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[8]' [-Wformat=] if (sscanf(s, "%8s %n", &atom.segid, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:293:7: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] if (sscanf(s, "%2s %n", &atom.insertion, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:305:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] if (sscanf(s, "%2s %n", &atom.chain, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:339:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] if (sscanf(s, "%2s %n", &atom.altloc, &n) < 1) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1101:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2258:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3561:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: 'iswhiteline' defined but not used [-Wunused-function] static int iswhiteline(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: 'strtoupper' defined but not used [-Wunused-function] static char *strtoupper(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] static int fpexpftoc(char *ftocstr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:997:13: warning: 'print_input_data' defined but not used [-Wunused-function] static void print_input_data(qmdata_t *data) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Executive.c -o build/temp.linux-x86_64-2.7/layer3/Executive.o layer3/Executive.c: In function 'ExecutiveGetHistogram': layer3/Executive.c:4510:7: warning: too many arguments for format [-Wformat-extra-args] " GetHistogram-Error: wrong object type.", objName ENDFB(G); ^ In file included from layer0/OOMac.h:21:0, from layer3/Executive.c:24: layer3/Executive.c: In function 'ExecutiveSetSymmetry': layer3/Executive.c:5913:19: warning: assignment makes integer from pointer without a cast [enabled by default] ok_assert(1, ok = symmetry); ^ layer0/Err.h:32:31: note: in definition of macro 'ok_assert' #define ok_assert(x, c) {if(!(c)) ok_raise(x);} ^ layer3/Executive.c: In function 'ExecutiveMapSet': layer3/Executive.c:6561:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] float tmp[3]; ^ layer3/Executive.c: In function 'ExecutiveSculptIterate': layer3/Executive.c:7036:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer3/Executive.c: In function 'ExecutiveRemoveAtoms': layer3/Executive.c:9396:7: warning: variable 'flag' set but not used [-Wunused-but-set-variable] int flag = false; ^ layer3/Executive.c: In function 'ExecutiveIterateList': layer3/Executive.c:10713:14: warning: variable 'cs' set but not used [-Wunused-but-set-variable] CoordSet *cs = NULL; ^ layer3/Executive.c: In function 'ExecutiveCenter': layer3/Executive.c:13702:23: warning: variable 'df' set but not used [-Wunused-but-set-variable] float mn[3], mx[3], df[3]; ^ layer3/Executive.c: In function 'ExecutiveRelease': layer3/Executive.c:15740:7: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42:0: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:65: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:41:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:0: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:468:12: warning: 'fio_read_int32' defined but not used [-Wunused-function] static int fio_read_int32(fio_fd fd, int *i) { ^ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:472:12: warning: 'fio_write_str' defined but not used [-Wunused-function] static int fio_write_str(fio_fd fd, const char *str) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42:0: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:65: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:49: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:43:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: In function 'read_js_structure': contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] fio_size_t bszmask; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:0, from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:87: contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: 'hash_delete' defined but not used [-Wunused-function] VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { ^ contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: 'hash_stats' defined but not used [-Wunused-function] VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:88:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] int last_ctnumber = -1; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Editor.c -o build/temp.linux-x86_64-2.7/layer3/Editor.o layer3/Editor.c: In function 'EditorDrawDihedral': layer3/Editor.c:113:22: warning: variable 'sele3' set but not used [-Wunused-but-set-variable] int sele0, sele3; ^ layer3/Editor.c:113:15: warning: variable 'sele0' set but not used [-Wunused-but-set-variable] int sele0, sele3; ^ layer3/Editor.c: In function 'EditorAttach': layer3/Editor.c:934:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] int state; ^ layer3/Editor.c: In function 'EditorReplace': layer3/Editor.c:1115:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] int state; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/PlugIOManager.c -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o layer3/PlugIOManager.c: In function 'PlugIOManagerLoadTraj': layer3/PlugIOManager.c:232:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if(stop > 0 && cnt >= stop || max > 0 && ncnt >= max) { ^ layer3/PlugIOManager.c: In function 'PlugIOManagerLoadVol': layer3/PlugIOManager.c:349:17: warning: variable 'isNew' set but not used [-Wunused-but-set-variable] int isNew = false; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Export.c -o build/temp.linux-x86_64-2.7/layer4/Export.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Cmd.c -o build/temp.linux-x86_64-2.7/layer4/Cmd.o layer4/Cmd.c: In function 'APIEnter': layer4/Cmd.c:132:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer4/Cmd.c: In function 'APIEnterBlocked': layer4/Cmd.c:167:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer4/Cmd.c: In function 'APIExit': layer4/Cmd.c:203:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer4/Cmd.c: In function 'APIExitBlocked': layer4/Cmd.c:213:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] ENDFD; ^ layer4/Cmd.c: In function 'CmdAlign': layer4/Cmd.c:2203:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] float result = -1.0; ^ layer4/Cmd.c: In function 'Cmd_New': layer4/Cmd.c:4193:11: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer4/Cmd.c: In function 'CmdPNG': layer4/Cmd.c:5985:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) { ^ layer4/Cmd.c: In function 'CmdLoadObject': layer4/Cmd.c:6937:9: warning: variable 'isTmp' set but not used [-Wunused-but-set-variable] int isTmp; ^ layer4/Cmd.c: In function 'CmdSetObjectColor': layer4/Cmd.c:7891:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result = -1; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp: In function 'int read_pbeq_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:262:55: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] printf("pbeqplugin) offset: %d\n", ftell(fd)); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'bool desres::molfile::Timekeys::init(const string&)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] keys[i].size(), m_framesize); ^ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format '%d' expects argument of type 'int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/PopUp.c -o build/temp.linux-x86_64-2.7/layer4/PopUp.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Menu.c -o build/temp.linux-x86_64-2.7/layer4/Menu.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:207:10: warning: unused variable 'l' [-Wunused-variable] int z, l, sentinel, convcnt; ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:220:7: warning: unused variable 'leftover' [-Wunused-variable] int leftover = (nperslice - (nlines - 1) * 6); ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:270:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp: In function 'int read_mmcif_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:85:14: warning: unused variable 'data' [-Wunused-variable] mmcifdata *data = (mmcifdata *)mydata; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:64:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'const char* get_pte_label(int)' defined but not used [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'float get_pte_mass(int)' defined but not used [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'float get_pte_vdw_radius(int)' defined but not used [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:98:14: warning: 'void* open_mmcif_write(const char*, const char*, int)' defined but not used [-Wunused-function] static void *open_mmcif_write(const char *filename, const char *filetype, ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, cube->fd); // go on to next line ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:351:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:356:35: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:141:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:0: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:137:12: warning: 'int vmd_file_is_executable(const char*)' defined but not used [-Wunused-function] static int vmd_file_is_executable(const char * filename) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable 'o' set but not used [-Wunused-but-set-variable] float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable 's' set but not used [-Wunused-but-set-variable] float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'int read_uhbd_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) { ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'int read_ccp4_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:370:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) { ^ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:183:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:44:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:76:30: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); // format ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:0: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:202:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:254:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:272:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:286:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:365:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:379:46: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:407:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:422:36: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Jparm, &prm->Nparm); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:426:34: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Natyp, &prm->Nphb); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:429:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:431:36: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:78:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:86:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:96:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:7: warning: unused variable 'x' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:10: warning: unused variable 'y' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:13: warning: unused variable 'z' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'int read_plt_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) { ^ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:0: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function] static void strnwscpy(char *target, const char *source, const int len) { ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:0: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:854:46: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Box[0], &prm->Box[1], &prm->Box[2]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:869:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Xcap, &prm->Ycap, &prm->Zcap); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:29: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:62: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:62: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:65: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:110:74: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int count_mdf_bonds(const char*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:135:7: warning: unused variable 'retval' [-Wunused-variable] int retval; ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:280:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:299:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:321:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:359:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:225:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:243:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:166:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:178:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:185:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:0: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function] static void strnwscpy(char *target, const char *source, const int len) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:0, from contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:45: contrib/uiuc/plugins/molfile_plugin/src/hash.c: At global scope: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: 'int hash_delete(hash_t*, const char*)' defined but not used [-Wunused-function] VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { ^ contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: 'char* hash_stats(hash_t*)' defined but not used [-Wunused-function] VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:0: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_timestep(md_file*, md_ts*)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1853:53: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[2] = xtc_receivebits(buf, bitsizeint[2]); ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1764:37: note: 'bitsizeint[2]' was declared here unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1852:53: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[1] = xtc_receivebits(buf, bitsizeint[1]); ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1764:37: note: 'bitsizeint[1]' was declared here unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1851:53: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[0] = xtc_receivebits(buf, bitsizeint[0]); ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1764:37: note: 'bitsizeint[0]' was declared here unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:0, from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:234:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:405:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:439:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:441:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:443:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:445:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:447:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:467:45: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:504:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ g++ -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Raw.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython2.7 -o build/lib.linux-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:65:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:146:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:159:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic build/temp.linux-x86_64-2.7/contrib/champ/chiral.o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o build/temp.linux-x86_64-2.7/contrib/champ/err2.o build/temp.linux-x86_64-2.7/contrib/champ/list.o build/temp.linux-x86_64-2.7/contrib/champ/vla.o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o build/temp.linux-x86_64-2.7/contrib/champ/sort.o build/temp.linux-x86_64-2.7/contrib/champ/champ.o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/chempy/champ/_champ.so + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.4wQ7k1 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 ++ dirname /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + cd pymol-1.7.1 + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + /usr/bin/python -c 'import setuptools; execfile("setup.py")' install --skip-build --root /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 numpy not available running install running install_lib creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/make_cmd2.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2 creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web copying build/lib.linux-x86_64-2.7/pymol_web/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web copying build/lib.linux-x86_64-2.7/pymol_web/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples copying build/lib.linux-x86_64-2.7/pymol_web/examples/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples copying build/lib.linux-x86_64-2.7/pymol_web/examples/justhttpd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_wx copying build/lib.linux-x86_64-2.7/pmg_wx/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_wx creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.linux-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/models.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cex.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/map.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/place.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/io.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/_champ.so -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments copying build/lib.linux-x86_64-2.7/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fast copying build/lib.linux-x86_64-2.7/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fast creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/_cmd.so -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/fedora.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/util.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/api.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/m4x.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib copying build/lib.linux-x86_64-2.7/pymol/contrib/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl copying build/lib.linux-x86_64-2.7/pymol/opengl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-x86_64-2.7/pymol/opengl/gl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut copying build/lib.linux-x86_64-2.7/pymol/opengl/glut/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu copying build/lib.linux-x86_64-2.7/pymol/opengl/glu/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-x86_64-2.7/pymol/embed/epymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2/make_cmd2.py to make_cmd2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/pymolhttpd.py to pymolhttpd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol_web/examples/justhttpd.py to justhttpd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling 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cgo.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing top-level names to pymol.egg-info/top_level.txt writing dependency_links to pymol.egg-info/dependency_links.txt writing manifest file 'pymol.egg-info/SOURCES.txt' warning: manifest_maker: standard file '-c' not found reading manifest file 'pymol.egg-info/SOURCES.txt' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol-1.7.1.3-py2.7.egg-info creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path copying data -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/data copying test -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples creating /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin copying pymol -> /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin + echo '#!/bin/sh' + echo 'export PYMOL_PATH=/usr/lib64/python2.7/site-packages/pymol' + echo '/usr/bin/python /usr/lib64/python2.7/site-packages/pymol/__init__.py "$@"' + cp -pr data examples test scripts /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/test/ref/T01.log + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/ref/T01.log + mkdir -p /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin + install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/bin/ + desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop + mkdir -p /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/pixmaps + install -p -m 644 /builddir/build/SOURCES/pymol-32.xpm /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/pixmaps/ + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/pymol-1.7.1 extracting debug info from /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/pymol/_cmd.so extracting debug info from /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7/site-packages/chempy/champ/_champ.so /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 50370 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: pymol-1.7.1-1.20140519svn4076.el7.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ogJF9y + umask 022 + cd /builddir/build/BUILD + cd pymol-1.7.1 + DOCDIR=/builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr LICENSE /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + cp -pr README /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64/usr/share/doc/pymol-1.7.1 + exit 0 Provides: application() application(pymol.desktop) mimehandler(chemical/seq-aa-fasta) mimehandler(chemical/seq-na-fasta) mimehandler(chemical/x-mdl-molfile) mimehandler(chemical/x-mdl-sdf) mimehandler(chemical/x-mol2) mimehandler(chemical/x-pdb) mimehandler(chemical/x-xyz) pymol = 1.7.1-1.20140519svn4076.el7 pymol(x86-64) = 1.7.1-1.20140519svn4076.el7 Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires: /bin/csh /bin/sh /usr/bin/python libGL.so.1()(64bit) libGLEW.so.1.10()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH) Processing files: pymol-wxpython-1.7.1-1.20140519svn4076.el7.x86_64 Provides: pymol-wxpython = 1.7.1-1.20140519svn4076.el7 pymol-wxpython(x86-64) = 1.7.1-1.20140519svn4076.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 2.7 Processing files: pymol-debuginfo-1.7.1-1.20140519svn4076.el7.x86_64 Provides: pymol-debuginfo = 1.7.1-1.20140519svn4076.el7 pymol-debuginfo(x86-64) = 1.7.1-1.20140519svn4076.el7 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 Wrote: /builddir/build/RPMS/pymol-1.7.1-1.20140519svn4076.el7.x86_64.rpm Wrote: /builddir/build/RPMS/pymol-wxpython-1.7.1-1.20140519svn4076.el7.x86_64.rpm Wrote: /builddir/build/RPMS/pymol-debuginfo-1.7.1-1.20140519svn4076.el7.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.SlMrNX + umask 022 + cd /builddir/build/BUILD + cd pymol-1.7.1 + rm -rf /builddir/build/BUILDROOT/pymol-1.7.1-1.20140519svn4076.el7.x86_64 + exit 0 Finish: rpmbuild pymol-1.7.1-1.20140519svn4076.el7.src.rpm Finish: build phase for pymol-1.7.1-1.20140519svn4076.el7.src.rpm INFO: Done(/var/lib/copr-rpmbuild/results/pymol-1.7.1-1.20140519svn4076.el7.src.rpm) Config(child) 2 minutes 42 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run