Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.
The command line parameters of this tool are:
INI file documentation of this tool:
OpenMS / TOPP release 2.2.0
Documentation generated on Tue Aug 29 2017 11:29:41 using doxygen 1.8.13